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##fileformat=VCFv4.1
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood">
##FILTER=<ID=q10,Description="Quality below 10">
##test=<xx=A,yy=B,zz=C>
##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##contig=<ID=1,length=249250621>
##contig=<ID=2,length=243199373>
##contig=<ID=3,length=243199373>
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A
1 3062915 . GTT G 1806 q10 DP=35;DP4=1,2,3,4;AN=2;AC=1 GT:GQ:DP:GL 0/1:409:35:-20,-5,-20
1 3062915 . G T 1806 q10 DP=35;DP4=1,2,3,4;AN=2;AC=1 GT:GQ:DP:GL 0/1:409:35:-20,-5,-20
1 3106154 . CA C 1792 PASS DP=32;AN=2;AC=1 GT:GQ:DP 0/1:245:32
1 3106154 . C T,CT 1792 PASS DP=32;AN=2;AC=1,0 GT:GQ:DP 0/1:245:32
1 3157410 . G A 628 q10 DP=21;AN=2;AC=2 GT:GQ:DP 1/1:21:21
1 3162006 . G A 1016 PASS DP=22;AN=2;AC=1 GT:GQ:DP 0/1:212:22
1 3177144 . GT G 727 PASS DP=30;AN=2;AC=1 GT:GQ:DP 0/1:150:30
1 3184885 . T TA 246 PASS DP=10;AN=2;AC=1 GT:GQ:DP 1/2:12:10
2 3199812 . G T 481 PASS DP=26;AN=2;AC=1 GT:GQ:DP 1/2:322:26
2 3199815 . C T 481 PASS DP=26;AN=2;AC=1 GT:GQ:DP 1/2:322:26
3 3212016 . C A 565 PASS DP=26;AN=2;AC=1 GT:GQ:DP 1/2:91:26
3 3212026 . C A 565 PASS DP=26;AN=2;AC=1 GT:GQ:DP 1/2:91:26
3 3212036 . C A 565 PASS DP=26;AN=2;AC=1 GT:GQ:DP 1/2:91:26
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