File: split-vep.4.vcf

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##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##contig=<ID=1,length=249250621>
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
##INFO=<ID=BCSQ,Number=.,Type=String,Description="Local consequence annotation from BCFtools/csq, see http://samtools.github.io/bcftools/howtos/csq-calling.html for details. Format: Consequence|gene|transcript|biotype|strand|amino_acid_change|dna_change">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
1	14464	.	A	T	2235.88	PASS	AF=1;BCSQ=non_coding|WASH7P||unprocessed_pseudogene
1	66053	.	G	A	65.5	PASS	.
1	66055	.	C	G	576.85	PASS	.
1	69270	.	A	G	64453.2	PASS	BCSQ=synonymous|OR4F5|ENST00000335137|protein_coding|+|60S|69270A>G
1	69428	.	T	G	455238	PASS	BCSQ=missense|OR4F5|ENST00000335137|protein_coding|+|113F>113C|69428T>G
1	69438	.	T	C	28054.4	PASS	BCSQ=synonymous|OR4F5|ENST00000335137|protein_coding|+|116Y|69438T>C
1	69453	.	G	A	49.81	PASS	BCSQ=synonymous|OR4F5|ENST00000335137|protein_coding|+|121K|69453G>A
1	69640	.	G	C	360.75	PASS	BCSQ=missense|OR4F5|ENST00000335137|protein_coding|+|184D>184H|69640G>C
1	69678	.	T	A	231.22	PASS	BCSQ=missense|OR4F5|ENST00000335137|protein_coding|+|196S>196R|69678T>A
1	69690	.	T	A	289.94	PASS	BCSQ=synonymous|OR4F5|ENST00000335137|protein_coding|+|200T|69690T>A
1	69696	.	T	C	37.01	PASS	BCSQ=synonymous|OR4F5|ENST00000335137|protein_coding|+|202C|69696T>C
1	69713	.	T	C	498.13	PASS	BCSQ=missense|OR4F5|ENST00000335137|protein_coding|+|208I>208T|69713T>C
1	69719	.	C	G	7943.31	PASS	BCSQ=stop_gained|OR4F5|ENST00000335137|protein_coding|+|210S>210*|69719C>G
1	69761	.	A	T	180095	PASS	BCSQ=missense|OR4F5|ENST00000335137|protein_coding|+|224D>224V|69761A>T
1	69808	.	G	C	52.73	PASS	BCSQ=missense|OR4F5|ENST00000335137|protein_coding|+|240V>240L|69808G>C
1	69816	.	G	C	158.87	PASS	BCSQ=missense|OR4F5|ENST00000335137|protein_coding|+|242L>242F|69816G>C
1	69897	.	T	C	21493.6	PASS	BCSQ=synonymous|OR4F5|ENST00000335137|protein_coding|+|269S|69897T>C
1	120705	.	T	C	4309.8	PASS	BCSQ=non_coding|RP11-34P13.7||lincRNA
1	120745	.	C	T	2554.27	PASS	BCSQ=non_coding|RP11-34P13.7||lincRNA
1	121028	.	CTA	C	81.23	PASS	BCSQ=non_coding|RP11-34P13.7||lincRNA
1	129077	.	G	A	84.32	PASS	BCSQ=non_coding|RP11-34P13.7||lincRNA
1	129122	.	A	G	121.6	PASS	BCSQ=non_coding|RP11-34P13.7||lincRNA
1	129148	.	GT	GTT,G	343484	PASS	BCSQ=non_coding|RP11-34P13.7||lincRNA
1	129285	.	G	A	6740.47	PASS	BCSQ=non_coding|RP11-34P13.7||lincRNA
1	129301	.	T	C	36.87	PASS	BCSQ=non_coding|RP11-34P13.7||lincRNA
1	129315	.	A	G	1616.86	PASS	BCSQ=non_coding|RP11-34P13.7||lincRNA
1	133355	.	G	T	107.63	PASS	BCSQ=non_coding|RP11-34P13.7||lincRNA,non_coding|CICP27||processed_pseudogene
1	133392	.	G	A	31.55	PASS	BCSQ=non_coding|RP11-34P13.7||lincRNA,non_coding|CICP27||processed_pseudogene
1	133477	.	G	T	40.05	PASS	BCSQ=non_coding|RP11-34P13.7||lincRNA,non_coding|CICP27||processed_pseudogene
1	133483	.	G	T	143466	PASS	BCSQ=non_coding|RP11-34P13.7||lincRNA,non_coding|CICP27||processed_pseudogene
1	133558	.	C	T	1041.19	PASS	BCSQ=non_coding|RP11-34P13.7||lincRNA,non_coding|CICP27||processed_pseudogene
1	135147	.	G	A	1291.73	PASS	BCSQ=3_prime_utr|AL627309.1|ENST00000423372|protein_coding
1	135151	.	G	A	2099.5	PASS	BCSQ=3_prime_utr|AL627309.1|ENST00000423372|protein_coding
1	135232	.	C	T	6306.06	PASS	BCSQ=3_prime_utr|AL627309.1|ENST00000423372|protein_coding
1	135265	.	T	C	98.15	PASS	BCSQ=3_prime_utr|AL627309.1|ENST00000423372|protein_coding
1	135297	.	C	T	292.28	PASS	BCSQ=3_prime_utr|AL627309.1|ENST00000423372|protein_coding
1	135982	.	A	G	3509.37	PASS	BCSQ=intron|AL627309.1||protein_coding
1	136041	.	C	A	72.79	PASS	BCSQ=intron|AL627309.1||protein_coding
1	136124	.	G	A	99.63	PASS	BCSQ=intron|AL627309.1||protein_coding
1	136210	.	G	A	129.71	PASS	BCSQ=intron|AL627309.1||protein_coding
1	137622	.	G	A	240.87	PASS	BCSQ=splice_region&3_prime_utr|AL627309.1|ENST00000423372|protein_coding
1	137825	.	G	A	119793	PASS	BCSQ=3_prime_utr|AL627309.1|ENST00000423372|protein_coding
1	267099	.	C	G	192.81	PASS	BCSQ=non_coding|AP006222.2||lincRNA
1	267132	.	T	C	3289.74	PASS	BCSQ=non_coding|AP006222.2||lincRNA
1	267147	.	G	A	142.23	PASS	BCSQ=non_coding|AP006222.2||lincRNA
1	267154	.	C	T	19978.8	PASS	BCSQ=non_coding|AP006222.2||lincRNA
1	267216	.	C	T	187.14	PASS	BCSQ=non_coding|AP006222.2||lincRNA
1	267220	.	A	C	213.29	PASS	BCSQ=non_coding|AP006222.2||lincRNA
1	267226	.	C	A	66.52	PASS	BCSQ=non_coding|AP006222.2||lincRNA
1	267227	.	TTAA	T	101119	PASS	BCSQ=non_coding|AP006222.2||lincRNA
1	267229	.	A	*,C	156630	PASS	BCSQ=non_coding|AP006222.2||lincRNA
1	267268	.	A	C	1112.11	PASS	.
1	267276	.	A	G	1380.44	PASS	.
1	267282	.	T	C	690.8	PASS	.
1	267289	.	T	TTA	2809.66	PASS	.
1	267295	.	A	C,*	64218.9	PASS	.
1	267300	.	T	*,TTA	53059.2	PASS	.
1	267303	.	T	*,C	62423.3	PASS	.
1	267305	.	TATA	*,T,CATA	144971	PASS	.
1	267309	.	ATAT	*,TTAT	145363	PASS	.
1	267310	.	T	*,A	63099.9	PASS	.
1	267316	.	ATATC	*,A	77789.8	PASS	.
1	267319	.	T	*,C	77970.5	PASS	.
1	267324	.	T	*,G,C	185470	PASS	.
1	267331	.	T	*,A	98694.5	PASS	.
1	267355	.	TATA	T,*	182207	PASS	.
1	267359	.	ATAT	*,A	146369	PASS	.
1	647265	.	C	T	391.71	PASS	BCSQ=non_coding|RP5-857K21.4||lincRNA
1	647380	.	T	C	1741.48	PASS	BCSQ=non_coding|RP5-857K21.4||lincRNA
1	647398	.	T	C	680.51	PASS	BCSQ=non_coding|RP5-857K21.4||lincRNA
1	662029	.	G	A	14832.6	PASS	BCSQ=non_coding|RP11-206L10.1||unprocessed_pseudogene
1	662414	.	C	T	796.79	PASS	BCSQ=non_coding|RP11-206L10.1||unprocessed_pseudogene
1	662531	.	G	A	382.5	PASS	BCSQ=non_coding|RP11-206L10.1||unprocessed_pseudogene
1	722032	.	C	T	40.43	PASS	BCSQ=non_coding|RP11-206L10.9||lincRNA
1	741163	.	G	A	67.26	PASS	BCSQ=non_coding|RP11-206L10.9||lincRNA,non_coding|RP11-206L10.8||transcribed_unprocessed_pseudogene,non_coding|RP11-206L10.8||processed_transcript
1	741181	.	T	C	158.83	PASS	BCSQ=non_coding|RP11-206L10.9||lincRNA,non_coding|RP11-206L10.8||transcribed_unprocessed_pseudogene,non_coding|RP11-206L10.8||processed_transcript
1	741235	.	G	A	13511.6	PASS	BCSQ=non_coding|RP11-206L10.9||lincRNA,non_coding|RP11-206L10.8||transcribed_unprocessed_pseudogene,non_coding|RP11-206L10.8||processed_transcript
1	741260	.	A	G	191.75	PASS	BCSQ=non_coding|RP11-206L10.9||lincRNA,non_coding|RP11-206L10.8||transcribed_unprocessed_pseudogene,non_coding|RP11-206L10.8||processed_transcript
1	741286	.	CAG	C	4534.64	PASS	BCSQ=non_coding|RP11-206L10.9||lincRNA,non_coding|RP11-206L10.8||transcribed_unprocessed_pseudogene,non_coding|RP11-206L10.8||processed_transcript
1	745347	.	T	C	56.66	PASS	BCSQ=non_coding|RP11-206L10.8||transcribed_unprocessed_pseudogene,non_coding|RP11-206L10.8||processed_transcript,non_coding|RP11-206L10.9||lincRNA
1	745370	.	TA	T	8641.83	PASS	BCSQ=non_coding|RP11-206L10.8||transcribed_unprocessed_pseudogene,non_coding|RP11-206L10.8||processed_transcript,non_coding|RP11-206L10.9||lincRNA
1	745425	.	AAATT	A	251.88	PASS	BCSQ=non_coding|RP11-206L10.8||transcribed_unprocessed_pseudogene,non_coding|RP11-206L10.8||processed_transcript,non_coding|RP11-206L10.9||lincRNA
1	745439	.	G	A	34303.8	PASS	BCSQ=non_coding|RP11-206L10.8||transcribed_unprocessed_pseudogene,non_coding|RP11-206L10.8||processed_transcript,non_coding|RP11-206L10.9||lincRNA
1	745477	.	C	T	17109.4	PASS	BCSQ=non_coding|RP11-206L10.8||transcribed_unprocessed_pseudogene,non_coding|RP11-206L10.8||processed_transcript
1	745573	.	T	G	276.91	PASS	BCSQ=non_coding|RP11-206L10.10||processed_transcript
1	745620	.	A	G	166.67	PASS	BCSQ=non_coding|RP11-206L10.10||processed_transcript
1	745642	.	AC	A	35881.9	PASS	BCSQ=non_coding|RP11-206L10.10||processed_transcript
1	753001	.	GT	G	43.25	PASS	BCSQ=non_coding|RP11-206L10.10||processed_transcript,non_coding|FAM87B||lincRNA
1	753016	.	T	C	40.09	PASS	BCSQ=non_coding|RP11-206L10.10||processed_transcript,non_coding|FAM87B||lincRNA
1	753110	.	G	A	55.21	PASS	BCSQ=non_coding|FAM87B||lincRNA
1	808662	.	T	C	285.9	PASS	BCSQ=non_coding|FAM41C||lincRNA
1	808665	.	C	G	194.95	PASS	BCSQ=non_coding|FAM41C||lincRNA
1	808672	.	G	T	174.78	PASS	BCSQ=non_coding|FAM41C||lincRNA,non_coding|TUBB8P11||unprocessed_pseudogene
1	808695	.	T	C	140.85	PASS	BCSQ=non_coding|FAM41C||lincRNA,non_coding|TUBB8P11||unprocessed_pseudogene
1	808708	.	A	G	182.54	PASS	BCSQ=non_coding|FAM41C||lincRNA,non_coding|TUBB8P11||unprocessed_pseudogene
1	808710	.	T	A	2168.76	PASS	BCSQ=non_coding|FAM41C||lincRNA,non_coding|TUBB8P11||unprocessed_pseudogene
1	808714	.	C	T	184.47	PASS	BCSQ=non_coding|FAM41C||lincRNA,non_coding|TUBB8P11||unprocessed_pseudogene
1	808723	.	C	G	289.66	PASS	BCSQ=non_coding|FAM41C||lincRNA,non_coding|TUBB8P11||unprocessed_pseudogene
1	809768	.	A	C	2167.1	PASS	BCSQ=non_coding|FAM41C||lincRNA
1	860416	.	G	A	616869	PASS	BCSQ=intron|SAMD11||protein_coding
1	860417	.	G	T	38.51	PASS	BCSQ=intron|SAMD11||protein_coding
1	860431	.	G	T	12736.1	PASS	BCSQ=intron|SAMD11||protein_coding
1	860461	.	G	A	822612	PASS	BCSQ=intron|SAMD11||protein_coding
1	860498	.	C	G	61631.5	PASS	BCSQ=intron|SAMD11||protein_coding
1	860504	.	G	A	2021.16	PASS	BCSQ=intron|SAMD11||protein_coding
1	860511	.	C	T	66.9	PASS	BCSQ=intron|SAMD11||protein_coding
1	860521	.	C	A	1.14406e+06	PASS	BCSQ=intron|SAMD11||protein_coding
1	860564	.	C	T	149.61	PASS	BCSQ=5_prime_utr|SAMD11|ENST00000437963|protein_coding
1	860604	.	G	A	37.35	PASS	BCSQ=intron|SAMD11||protein_coding
1	860607	.	A	G	302.91	PASS	BCSQ=intron|SAMD11||protein_coding
1	860637	.	AG	A	176.75	PASS	BCSQ=intron|SAMD11||protein_coding
1	860684	.	G	A	77.88	PASS	BCSQ=intron|SAMD11||protein_coding
1	860688	.	G	A	1.42925e+06	PASS	BCSQ=intron|SAMD11||protein_coding
1	861172	.	C	T	44.68	PASS	BCSQ=5_prime_utr|SAMD11|ENST00000342066|protein_coding
1	861177	.	C	A	271.27	PASS	BCSQ=5_prime_utr|SAMD11|ENST00000342066|protein_coding
1	861178	.	G	A	253.29	PASS	BCSQ=splice_region&5_prime_utr|SAMD11|ENST00000342066|protein_coding
1	861196	.	G	C	167.05	PASS	BCSQ=intron|SAMD11||protein_coding
1	861209	.	T	A	120.43	PASS	BCSQ=intron|SAMD11||protein_coding
1	861211	.	C	T	537.5	PASS	BCSQ=intron|SAMD11||protein_coding
1	861213	.	C	T	69.71	PASS	BCSQ=intron|SAMD11||protein_coding