File: stats.B.chk

package info (click to toggle)
bcftools 1.16-1
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 20,252 kB
  • sloc: ansic: 60,589; perl: 5,818; python: 587; sh: 333; makefile: 284
file content (87 lines) | stat: -rw-r--r-- 1,925 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
SN	0	number of samples:	3
SN	1	number of samples:	3
SN	0	number of records:	0
SN	0	number of no-ALTs:	0
SN	0	number of SNPs:	0
SN	0	number of MNPs:	0
SN	0	number of indels:	0
SN	0	number of others:	0
SN	0	number of multiallelic sites:	0
SN	0	number of multiallelic SNP sites:	0
SN	1	number of records:	0
SN	1	number of no-ALTs:	0
SN	1	number of SNPs:	0
SN	1	number of MNPs:	0
SN	1	number of indels:	0
SN	1	number of others:	0
SN	1	number of multiallelic sites:	0
SN	1	number of multiallelic SNP sites:	0
SN	2	number of records:	4
SN	2	number of no-ALTs:	0
SN	2	number of SNPs:	4
SN	2	number of MNPs:	0
SN	2	number of indels:	0
SN	2	number of others:	0
SN	2	number of multiallelic sites:	0
SN	2	number of multiallelic SNP sites:	0
TSTV	0	0	0	0.00	0	0	0.00
TSTV	1	0	0	0.00	0	0	0.00
TSTV	2	3	1	3.00	3	1	3.00
SiS	0	1	0	0	0	0	0	0	0
SiS	1	1	0	0	0	0	0	0	0
SiS	2	1	1	0	1	0	0	0	0
AF	2	0.000000	1	0	1	0	0	0	0
AF	2	0.490000	3	3	0	0	0	0	0
QUAL	2	.	4	3	1	0
ST	0	A>C	0
ST	0	A>G	0
ST	0	A>T	0
ST	0	C>A	0
ST	0	C>G	0
ST	0	C>T	0
ST	0	G>A	0
ST	0	G>C	0
ST	0	G>T	0
ST	0	T>A	0
ST	0	T>C	0
ST	0	T>G	0
ST	1	A>C	0
ST	1	A>G	0
ST	1	A>T	0
ST	1	C>A	0
ST	1	C>G	0
ST	1	C>T	0
ST	1	G>A	0
ST	1	G>C	0
ST	1	G>T	0
ST	1	T>A	0
ST	1	T>C	0
ST	1	T>G	0
ST	2	A>C	0
ST	2	A>G	0
ST	2	A>T	0
ST	2	C>A	0
ST	2	C>G	0
ST	2	C>T	0
ST	2	G>A	3
ST	2	G>C	0
ST	2	G>T	1
ST	2	T>A	0
ST	2	T>C	0
ST	2	T>G	0
SN	2	number of samples:	1
GCsAF	2	0.490000	0	1	0	0	2	0	0	3
NRDs	2	75.000000	0.000000	75.000000	0.000000
NRDi	2	0.000000	0.000000	0.000000	0.000000
GCsS	2	B	75.000	0	1	0	0	3	0	0
GCiS	2	B	0.000	0	0	0	0	0	0	0
GCTs	B	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCTi	B	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
PSC	0	B	0	0	0	0	0	0	0.0	0	0	0	0
PSC	1	B	0	0	0	0	0	0	0.0	0	0	0	0
PSC	2	B	0	0	4	3	1	0	0.0	4	0	0	0
PSI	0	B	0	0	0	0.00	0	0	0	0
PSI	1	B	0	0	0	0.00	0	0	0	0
PSI	2	B	0	0	0	0.00	0	0	0	0
HWE	2	0.000000	1	0.990000	0.990000	0.990000
HWE	2	0.490000	3	0.990000	0.990000	0.990000