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##fileformat=VCFv4.1
##FILTER=<ID=PASS,Description="All filters passed">
##reference=file:///seq/references/1000Genomes-NCBI37.fasta
##contig=<ID=11,length=135006516>
##contig=<ID=20,length=63025520>
##contig=<ID=X,length=155270560>
##contig=<ID=Y,length=59373566>
##FILTER=<ID=StrandBias,Description="Min P-value for strand bias (INFO/PV4) [0.0001]">
##FILTER=<ID=BaseQualBias,Description="Min P-value for baseQ bias (INFO/PV4) [1e-100]">
##FILTER=<ID=MapQualBias,Description="Min P-value for mapQ bias (INFO/PV4) [0]">
##FILTER=<ID=EndDistBias,Description="Min P-value for end distance bias (INFO/PV4) [0.0001]">
##FILTER=<ID=MinAB,Description="Minimum number of alternate bases (INFO/DP4) [2]">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled genotype likelihoods">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001 NA00002 NA00003
11 2343543 . A . 999 PASS . PL 0 0 0
11 5464562 . C T 999 PASS . PL 0,0,0 0,0,0 0,0,0
20 76962 rs6111385 T C 999 PASS . PL 255,0,255 255,255,0 255,255,0
20 126310 . ACC A 999 StrandBias;EndDistBias . PL 255,0,132 255,0,139 255,213,0
20 138125 rs2298108 G T 999 PASS . PL 135,0,163 140,0,255 255,199,0
20 138148 rs2298109 C T 999 PASS . PL 195,0,255 192,0,255 255,235,0
20 271225 . T TTTA,TA 999 StrandBias . PL 151,53,203,0,52,159 255,0,213,255,255,255 255,255,255,255,0,241
20 304568 . C T 999 PASS . PL 95,0,255 192,0,255 255,95,0
20 326891 . A AC 999 PASS . PL 255,0,132 255,0,139 .,.,.
X 2928329 rs62584840 C T 999 PASS . PL 0,56 0,81 73,0,19
X 2933066 rs61746890 G C 999 PASS . PL 0,255 0,255 255,255,255
X 2942109 rs5939407 T C 999 PASS . PL 0,255 255,0 255,157,0
X 3048719 . T C 999 PASS . PL 0,255 255,0 255,0,157
Y 8657215 . C A 999 PASS . PL 0,255 255,0 .
Y 10011673 rs78249411 G A 999 MinAB . PL 126,101 95,0 .
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