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/*
* annot.cpp
*
* Created on: Aug 3, 2009
* Author: Ben Langmead
*/
#include <stdexcept>
#include "annot.h"
using namespace std;
/**
* Parse an annotation-map file.
*/
void AnnotationMap::parse() {
ifstream in(fname_);
if(!in.good() && in.is_open()) {
cerr << "Could not open annotation file " << fname_ << endl;
throw 1;
}
while(in.peek() != EOF) {
UPair pos;
CharPair an;
in >> pos.first >> pos.second >> an.first >> an.second;
map_[pos] = an;
while(isspace(in.peek())) in.get();
}
in.close();
}
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