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discosnp 1%3A2.6.2-5
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 3,656 kB
  • sloc: python: 5,893; sh: 2,966; cpp: 2,692; makefile: 14

Folder: scripts

d .. (parent)
d d rwxr-xr-x 4,096 jenkins
d d rwxr-xr-x 4,096 k3000
d d rwxr-xr-x 59 phasing
d d rwxr-xr-x 4,096 simulations
d d rwxr-xr-x 99 validation_scripts
- - rwxr-xr-x 101,585 ClassVCF_creator.py
- - rwxr-xr-x 9,307 VCF_creator.py
- - rw-r--r-- 2,281 clusters_and_fasta_to_fasta.py_DEPRECATED
- - rwxr-xr-x 1,333 create_IGV_compatible_VCF.sh
- - rwxr-xr-x 6,086 create_filtered_vcf.py
- - rwxr-xr-x 1,782 discoSnp%2B%2B_to_csv.py
- - rwxr-xr-x 2,980 filterOnBestDP_multiple_variant_at_same_pos.py
- - rw-r--r-- 2,239 filter_out_using_MAF.py
- - rw-r--r-- 2,265 filter_out_using_ratio_of_covered_files.py
- - rw-r--r-- 1,474 format_phased_for_K2000.py
- - rw-r--r-- 255 format_phased_for_clustering.py
- - rw-r--r-- 5,583 format_phased_variants_for_haplotyping.py
- - rw-r--r-- 743 from_path_to_edges.py
- - rwxr-xr-x 2,896 from_phased_alleles_to_clusters.sh
- - rwxr-xr-x 17,221 functionObjectVCF_creator.py
- - rwxr-xr-x 2,010 keep_extensions_disco_file.py
- - rwxr-xr-x 3,645 redundancy_removal_discosnp.py
- - rw-r--r-- 653 remove_extensions_disco_file.py
- - rw-r--r-- 1,148 remove_non_biallelic.py
- - rw-r--r-- 1,310 remove_non_covered_genotypes.py
- - rwxr-xr-x 15,162 run_VCF_creator.sh
- - rw-r--r-- 5,542 split_multiple_snps.py
- - rwxr-xr-x 7,631 vcf_formatting_functions.py
- - rw-r--r-- 2,359 zero2one.py