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#!/usr/bin/env ruby
GC_code = Struct.new("GC_code",:name,:idnum,:aa,:start)
def gc_code_pretty(gc)
l = [" {\"#{gc.name}\"",
"(unsigned int) #{gc.idnum}",
"\"#{gc.aa}\"",
"\"#{gc.start}\"}"]
return l.join(",\n ")
end
def transnum_idx_pretty(idx_map,idx)
if idx_map.has_key?(idx)
return " #{idx_map[idx]}U"
else
return " GT_UNDEFTRANSNUM"
end
end
start_parse = false
current = nil
codelist = Array.new()
idx_map = Hash.new()
maxnum = nil
idx = 0
STDIN.each_line do |line|
if start_parse
if m = line.match(/name \"([^\"]*)\"/)
if not m[1].match(/SGC[0-9]/)
if not current.nil?
codelist.push(current)
end
current = GC_code.new(m[1],nil,nil,nil)
end
elsif m = line.match(/id (\d+)/)
current.idnum = m[1].to_i
idx_map[current.idnum] = idx
idx += 1
maxnum = current.idnum
elsif m = line.match(/sncbieaa \"([^\"]*)\"/)
current.start = m[1]
elsif m = line.match(/ncbieaa \"([^\"]*)\"/)
current.aa = m[1]
end
elsif line.match(/^Genetic-code-table/)
start_parse = true
end
end
codelist.push(current)
puts "static GtTranslationScheme schemetable[] = {"
puts codelist.map {|gc| gc_code_pretty(gc)}.join(",\n")
puts "};"
puts "\nstatic unsigned int transnum2index[] =\n{"
puts (0..maxnum).to_a.map {|idx| transnum_idx_pretty(idx_map,idx)}.join(",\n")
puts "};"
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