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|
# Generated by the protocol buffer compiler. DO NOT EDIT!
# source: BaseInformationRecords.proto
import sys
_b=sys.version_info[0]<3 and (lambda x:x) or (lambda x:x.encode('latin1'))
from google.protobuf import descriptor as _descriptor
from google.protobuf import message as _message
from google.protobuf import reflection as _reflection
from google.protobuf import symbol_database as _symbol_database
from google.protobuf import descriptor_pb2
# @@protoc_insertion_point(imports)
_sym_db = _symbol_database.Default()
DESCRIPTOR = _descriptor.FileDescriptor(
name='BaseInformationRecords.proto',
package='org.campagnelab.dl.varanalysis.protobuf',
syntax='proto2',
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)
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filename=None,
file=DESCRIPTOR,
containing_type=None,
fields=[
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options=None,
is_extendable=False,
syntax='proto2',
extension_ranges=[],
oneofs=[
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serialized_start=73,
serialized_end=175,
)
_BASEINFORMATION = _descriptor.Descriptor(
name='BaseInformation',
full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation',
filename=None,
file=DESCRIPTOR,
containing_type=None,
fields=[
_descriptor.FieldDescriptor(
name='reference_index', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation.reference_index', index=0,
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_descriptor.FieldDescriptor(
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number=10, type=9, cpp_type=9, label=1,
has_default_value=False, default_value=_b("").decode('utf-8'),
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
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_descriptor.FieldDescriptor(
name='position', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation.position', index=2,
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_descriptor.FieldDescriptor(
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message_type=None, enum_type=None, containing_type=None,
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_descriptor.FieldDescriptor(
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number=4, type=9, cpp_type=9, label=1,
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message_type=None, enum_type=None, containing_type=None,
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_descriptor.FieldDescriptor(
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syntax='proto2',
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_SAMPLEINFO = _descriptor.Descriptor(
name='SampleInfo',
full_name='org.campagnelab.dl.varanalysis.protobuf.SampleInfo',
filename=None,
file=DESCRIPTOR,
containing_type=None,
fields=[
_descriptor.FieldDescriptor(
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_COUNTINFO = _descriptor.Descriptor(
name='CountInfo',
full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo',
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file=DESCRIPTOR,
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fields=[
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name='qualityScoresForwardStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.qualityScoresForwardStrand', index=6,
number=16, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='qualityScoresReverseStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.qualityScoresReverseStrand', index=7,
number=17, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='readIndicesForwardStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.readIndicesForwardStrand', index=8,
number=18, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='readIndicesReverseStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.readIndicesReverseStrand', index=9,
number=19, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='readMappingQualityForwardStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.readMappingQualityForwardStrand', index=10,
number=21, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='readMappingQualityReverseStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.readMappingQualityReverseStrand', index=11,
number=22, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='numVariationsInReads', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.numVariationsInReads', index=12,
number=23, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='insertSizes', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.insertSizes', index=13,
number=24, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='targetAlignedLengths', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.targetAlignedLengths', index=14,
number=25, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='queryAlignedLengths', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.queryAlignedLengths', index=15,
number=26, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='queryPositions', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.queryPositions', index=16,
number=30, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='pairFlags', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.pairFlags', index=17,
number=27, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='distancesToReadVariationsForwardStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.distancesToReadVariationsForwardStrand', index=18,
number=28, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='distancesToReadVariationsReverseStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.distancesToReadVariationsReverseStrand', index=19,
number=29, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='distanceToStartOfRead', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.distanceToStartOfRead', index=20,
number=31, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='distanceToEndOfRead', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.distanceToEndOfRead', index=21,
number=32, type=11, cpp_type=10, label=3,
has_default_value=False, default_value=[],
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='isCalled', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.isCalled', index=22,
number=20, type=8, cpp_type=7, label=1,
has_default_value=False, default_value=False,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='gobyGenotypeIndex', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.gobyGenotypeIndex', index=23,
number=40, type=13, cpp_type=3, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='offset', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.offset', index=24,
number=101, type=13, cpp_type=3, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
],
extensions=[
],
nested_types=[],
enum_types=[
],
options=None,
is_extendable=False,
syntax='proto2',
extension_ranges=[],
oneofs=[
],
serialized_start=780,
serialized_end=2532,
)
_NUMBERWITHFREQUENCY = _descriptor.Descriptor(
name='NumberWithFrequency',
full_name='org.campagnelab.dl.varanalysis.protobuf.NumberWithFrequency',
filename=None,
file=DESCRIPTOR,
containing_type=None,
fields=[
_descriptor.FieldDescriptor(
name='number', full_name='org.campagnelab.dl.varanalysis.protobuf.NumberWithFrequency.number', index=0,
number=1, type=5, cpp_type=1, label=2,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='frequency', full_name='org.campagnelab.dl.varanalysis.protobuf.NumberWithFrequency.frequency', index=1,
number=2, type=13, cpp_type=3, label=2,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
],
extensions=[
],
nested_types=[],
enum_types=[
],
options=None,
is_extendable=False,
syntax='proto2',
extension_ranges=[],
oneofs=[
],
serialized_start=2534,
serialized_end=2590,
)
_SOMATICOUTPUT = _descriptor.Descriptor(
name='SomaticOutput',
full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput',
filename=None,
file=DESCRIPTOR,
containing_type=None,
fields=[
_descriptor.FieldDescriptor(
name='isSomatic', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.isSomatic', index=0,
number=200, type=8, cpp_type=7, label=2,
has_default_value=False, default_value=False,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='reference_index', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.reference_index', index=1,
number=1, type=13, cpp_type=3, label=2,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='reference_id', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.reference_id', index=2,
number=10, type=9, cpp_type=9, label=1,
has_default_value=False, default_value=_b("").decode('utf-8'),
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='position', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.position', index=3,
number=2, type=13, cpp_type=3, label=2,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='mutatedBase', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.mutatedBase', index=4,
number=4, type=9, cpp_type=9, label=1,
has_default_value=False, default_value=_b("").decode('utf-8'),
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='indexOfMutatedBase', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.indexOfMutatedBase', index=5,
number=7, type=13, cpp_type=3, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='frequencyOfMutation', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.frequencyOfMutation', index=6,
number=6, type=2, cpp_type=6, label=1,
has_default_value=False, default_value=float(0),
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='referenceBase', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.referenceBase', index=7,
number=5, type=9, cpp_type=9, label=1,
has_default_value=False, default_value=_b("").decode('utf-8'),
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
],
extensions=[
],
nested_types=[],
enum_types=[
],
options=None,
is_extendable=False,
syntax='proto2',
extension_ranges=[],
oneofs=[
],
serialized_start=2593,
serialized_end=2794,
)
_BASEINFORMATIONCOLLECTION.fields_by_name['records'].message_type = _BASEINFORMATION
_BASEINFORMATION.fields_by_name['samples'].message_type = _SAMPLEINFO
_SAMPLEINFO.fields_by_name['counts'].message_type = _COUNTINFO
_COUNTINFO.fields_by_name['qualityScoresForwardStrand'].message_type = _NUMBERWITHFREQUENCY
_COUNTINFO.fields_by_name['qualityScoresReverseStrand'].message_type = _NUMBERWITHFREQUENCY
_COUNTINFO.fields_by_name['readIndicesForwardStrand'].message_type = _NUMBERWITHFREQUENCY
_COUNTINFO.fields_by_name['readIndicesReverseStrand'].message_type = _NUMBERWITHFREQUENCY
_COUNTINFO.fields_by_name['readMappingQualityForwardStrand'].message_type = _NUMBERWITHFREQUENCY
_COUNTINFO.fields_by_name['readMappingQualityReverseStrand'].message_type = _NUMBERWITHFREQUENCY
_COUNTINFO.fields_by_name['numVariationsInReads'].message_type = _NUMBERWITHFREQUENCY
_COUNTINFO.fields_by_name['insertSizes'].message_type = _NUMBERWITHFREQUENCY
_COUNTINFO.fields_by_name['targetAlignedLengths'].message_type = _NUMBERWITHFREQUENCY
_COUNTINFO.fields_by_name['queryAlignedLengths'].message_type = _NUMBERWITHFREQUENCY
_COUNTINFO.fields_by_name['queryPositions'].message_type = _NUMBERWITHFREQUENCY
_COUNTINFO.fields_by_name['pairFlags'].message_type = _NUMBERWITHFREQUENCY
_COUNTINFO.fields_by_name['distancesToReadVariationsForwardStrand'].message_type = _NUMBERWITHFREQUENCY
_COUNTINFO.fields_by_name['distancesToReadVariationsReverseStrand'].message_type = _NUMBERWITHFREQUENCY
_COUNTINFO.fields_by_name['distanceToStartOfRead'].message_type = _NUMBERWITHFREQUENCY
_COUNTINFO.fields_by_name['distanceToEndOfRead'].message_type = _NUMBERWITHFREQUENCY
DESCRIPTOR.message_types_by_name['BaseInformationCollection'] = _BASEINFORMATIONCOLLECTION
DESCRIPTOR.message_types_by_name['BaseInformation'] = _BASEINFORMATION
DESCRIPTOR.message_types_by_name['SampleInfo'] = _SAMPLEINFO
DESCRIPTOR.message_types_by_name['CountInfo'] = _COUNTINFO
DESCRIPTOR.message_types_by_name['NumberWithFrequency'] = _NUMBERWITHFREQUENCY
DESCRIPTOR.message_types_by_name['SomaticOutput'] = _SOMATICOUTPUT
_sym_db.RegisterFileDescriptor(DESCRIPTOR)
BaseInformationCollection = _reflection.GeneratedProtocolMessageType('BaseInformationCollection', (_message.Message,), dict(
DESCRIPTOR = _BASEINFORMATIONCOLLECTION,
__module__ = 'BaseInformationRecords_pb2'
# @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.BaseInformationCollection)
))
_sym_db.RegisterMessage(BaseInformationCollection)
BaseInformation = _reflection.GeneratedProtocolMessageType('BaseInformation', (_message.Message,), dict(
DESCRIPTOR = _BASEINFORMATION,
__module__ = 'BaseInformationRecords_pb2'
# @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.BaseInformation)
))
_sym_db.RegisterMessage(BaseInformation)
SampleInfo = _reflection.GeneratedProtocolMessageType('SampleInfo', (_message.Message,), dict(
DESCRIPTOR = _SAMPLEINFO,
__module__ = 'BaseInformationRecords_pb2'
# @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.SampleInfo)
))
_sym_db.RegisterMessage(SampleInfo)
CountInfo = _reflection.GeneratedProtocolMessageType('CountInfo', (_message.Message,), dict(
DESCRIPTOR = _COUNTINFO,
__module__ = 'BaseInformationRecords_pb2'
# @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.CountInfo)
))
_sym_db.RegisterMessage(CountInfo)
NumberWithFrequency = _reflection.GeneratedProtocolMessageType('NumberWithFrequency', (_message.Message,), dict(
DESCRIPTOR = _NUMBERWITHFREQUENCY,
__module__ = 'BaseInformationRecords_pb2'
# @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.NumberWithFrequency)
))
_sym_db.RegisterMessage(NumberWithFrequency)
SomaticOutput = _reflection.GeneratedProtocolMessageType('SomaticOutput', (_message.Message,), dict(
DESCRIPTOR = _SOMATICOUTPUT,
__module__ = 'BaseInformationRecords_pb2'
# @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.SomaticOutput)
))
_sym_db.RegisterMessage(SomaticOutput)
DESCRIPTOR.has_options = True
DESCRIPTOR._options = _descriptor._ParseOptions(descriptor_pb2.FileOptions(), _b('\n\'org.campagnelab.dl.varanalysis.protobufH\001'))
# @@protoc_insertion_point(module_scope)
|
