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/*
* collect.cpp
* Dotur
*
* Created by Sarah Westcott on 11/18/08.
* Copyright 2008 Schloss Lab UMASS Amherst. All rights reserved.
*
*/
#include "collect.h"
/***********************************************************************/
int Collect::getCurve(float percentFreq = 0.01){
try {
RAbundVector rabund(order->getNumBins());
SAbundVector rank(order->getMaxRank()+1);
//sets displays label
for(int i=0;i<displays.size();i++){ displays[i]->init(label); }
CollectorsCurveData ccd; ccd.registerDisplays(displays);
//convert freq percentage to number
int increment = 1;
if (percentFreq < 1.0) { increment = numSeqs * percentFreq; }
else { increment = percentFreq; }
for(int i=0;i<numSeqs;i++){
if (m->getControl_pressed()) { return 1; }
int binNumber = order->get(i);
int abundance = rabund.get(binNumber);
rank.set(abundance, rank.get(abundance)-1);
abundance++;
rabund.set(binNumber, abundance);
rank.set(abundance, rank.get(abundance)+1); //increment rank(abundance)
if((i == 0) || (i+1) % increment == 0){ ccd.updateRankData(rank); }
}
if(numSeqs % increment != 0){ ccd.updateRankData(rank); }
for(int i=0;i<displays.size();i++){ displays[i]->reset(); }
return 0;
}
catch(exception& e) {
m->errorOut(e, "Collect", "getCurve");
exit(1);
}
}
/***********************************************************************/
int Collect::getSharedCurve(float percentFreq = 0.01){
try {
vector<SharedRAbundVector*> lookup;
map<string, int> indexLookup;
//create and initialize vector of sharedvectors, one for each group
vector<string> groups = sharedorder->getGroups();
for (int i = 0; i < groups.size(); i++) {
SharedRAbundVector* temp = new SharedRAbundVector(sharedorder->getMaxRank()+1);
temp->setLabel(sharedorder->getLabel());
temp->setGroup(groups[i]);
indexLookup[groups[i]] = i;
lookup.push_back(temp);
}
map<string, int> groupComboToColumn = getGroupComb(groups); //makes 'uniqueAB uniqueAC uniqueBC' if your groups are A, B, C
SharedCollectorsCurveData ccd; ccd.registerDisplays(displays); //adds a displays to ccd management
//convert freq percentage to number
int increment = 1;
if (percentFreq < 1.0) { increment = numSeqs * percentFreq; }
else { increment = percentFreq; }
for(int i=0;i<numSeqs;i++){
if (m->getControl_pressed()) { break; }
//get first sample
individual chosen = sharedorder->get(i);
lookup[indexLookup[chosen.group]]->increment(chosen.binNumber);
//calculate at 0 and the given increment
if((i == 0) || (i+1) % increment == 0){
ccd.updateSharedData(lookup, i+1, groupComboToColumn);
}
}
if (m->getControl_pressed()) { for (int j = 0; j < lookup.size(); j++) { delete lookup[j]; } return 1; }
//calculate last label if you haven't already
if(numSeqs % increment != 0){ ccd.updateSharedData(lookup, numSeqs, groupComboToColumn); }
//resets output files
for(int i=0;i<displays.size();i++){ displays[i]->reset(); }
//memory cleanup
for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; }
return 0;
}
catch(exception& e) {
m->errorOut(e, "Collect", "getSharedCurve");
exit(1);
}
}
/**************************************************************************************/
map<string, int> Collect::getGroupComb(vector<string> mGroups) {
string group;
numGroupComb = 0;
map<string, int> groupComboToColumn;
int numGroups = mGroups.size();
for (int i = 0; i < (numGroups - 1); i++) {
for (int l = i+1; l < numGroups; l++) {
group = mGroups[i] +"_"+ mGroups[l];
groupComb.push_back(group);
groupComboToColumn[group] = numGroupComb;
numGroupComb++;
}
}
for(int i=0;i<displays.size();i++){
bool hasLciHci = displays[i]->hasLciHci();
groupLabel = "";
for (int s = 0; s < groupComb.size(); s++) {
if (hasLciHci) { groupLabel += label +"_"+ groupComb[s] + "\t" + label + groupComb[s] + "lci\t" + label + groupComb[s] + "hci\t"; }
else{ groupLabel += label +"_"+ groupComb[s] + "\t"; }
}
string groupLabelAll = groupLabel + label +"_"+ "all\t";
if ((displays[i]->isCalcMultiple() ) && (displays[i]->getAll() )) { displays[i]->init(groupLabelAll); }
else { displays[i]->init(groupLabel); }
}
return groupComboToColumn;
}
/**************************************************************************************/
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