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mothur 1.48.1-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 13,692 kB
  • sloc: cpp: 161,866; makefile: 122; sh: 31

Folder: source

d .. (parent)
d d rwxr-xr-x 8,192 calculators
d d rwxr-xr-x 4,096 chimera
d d rwxr-xr-x 4,096 classifier
d d rwxr-xr-x 4,096 clearcut
d d rwxr-xr-x 12,288 commands
d d rwxr-xr-x 4,096 communitytype
d d rwxr-xr-x 4,096 datastructures
d d rwxr-xr-x 4,096 engines
d d rwxr-xr-x 120 metastats
d d rwxr-xr-x 4,096 read
d d rwxr-xr-x 46 svm
d d rwxr-xr-x 4,096 uchime_src
- - rw-r--r-- 6,977 alignreport.cpp
- - rw-r--r-- 4,290 alignreport.hpp
- - rwxr-xr-x 1,391 averagelinkage.cpp
- - rwxr-xr-x 10,740 calcsparcc.cpp
- - rwxr-xr-x 1,488 calcsparcc.h
- - rwxr-xr-x 12,193 checked.h
- - rwxr-xr-x 8,183 cluster.cpp
- - rwxr-xr-x 2,449 cluster.hpp
- - rwxr-xr-x 17,885 clusterclassic.cpp
- - rwxr-xr-x 1,184 clusterclassic.h
- - rwxr-xr-x 5,345 collect.cpp
- - rwxr-xr-x 1,020 collect.h
- - rwxr-xr-x 3,522 collectdisplay.h
- - rwxr-xr-x 2,769 collectorscurvedata.h
- - rw-r--r-- 52,837 commandfactory.cpp
- - rwxr-xr-x 1,123 commandfactory.hpp
- - rwxr-xr-x 2,445 commandoptionparser.cpp
- - rwxr-xr-x 573 commandoptionparser.hpp
- - rwxr-xr-x 3,734 commandparameter.h
- - rwxr-xr-x 978 completelinkage.cpp
- - rwxr-xr-x 12,289 consensus.cpp
- - rwxr-xr-x 2,257 consensus.h
- - rwxr-xr-x 10,750 core.h
- - rwxr-xr-x 17,077 currentfile.cpp
- - rwxr-xr-x 13,246 currentfile.h
- - rwxr-xr-x 951 display.h
- - rwxr-xr-x 2,054 dlibshuff.cpp
- - rwxr-xr-x 483 dlibshuff.h
- - rwxr-xr-x 4,494 endiannessmacros.h
- - rwxr-xr-x 6,994 fileoutput.cpp
- - rwxr-xr-x 2,877 fileoutput.h
- - rwxr-xr-x 3,802 gotohoverlap.cpp
- - rwxr-xr-x 1,445 gotohoverlap.hpp
- - rwxr-xr-x 27,033 heatmap.cpp
- - rwxr-xr-x 2,233 heatmap.h
- - rwxr-xr-x 8,888 heatmapsim.cpp
- - rwxr-xr-x 834 heatmapsim.h
- - rwxr-xr-x 30,654 inputdata.cpp
- - rwxr-xr-x 1,935 inputdata.h
- - rwxr-xr-x 3,626 libshuff.cpp
- - rwxr-xr-x 942 libshuff.h
- - rwxr-xr-x 81,411 linearalgebra.cpp
- - rwxr-xr-x 3,764 linearalgebra.h
- - rwxr-xr-x 5,137 mothur.cpp
- - rw-r--r-- 18,700 mothur.h
- - rwxr-xr-x 21,834 mothurout.cpp
- - rwxr-xr-x 4,575 mothurout.h
- - rwxr-xr-x 11,728 myseqdist.cpp
- - rwxr-xr-x 808 myseqdist.h
- - rwxr-xr-x 15,535 nast.cpp
- - rwxr-xr-x 1,342 nast.hpp
- - rwxr-xr-x 11,048 needlemanoverlap.cpp
- - rwxr-xr-x 1,438 needlemanoverlap.hpp
- - rwxr-xr-x 741 noalign.cpp
- - rwxr-xr-x 549 noalign.hpp
- - rwxr-xr-x 400 observable.h
- - rwxr-xr-x 12,732 opticluster.cpp
- - rwxr-xr-x 2,236 opticluster.h
- - rw-r--r-- 32,407 optifitcluster.cpp
- - rw-r--r-- 2,570 optifitcluster.hpp
- - rwxr-xr-x 12,383 optionparser.cpp
- - rwxr-xr-x 867 optionparser.h
- - rwxr-xr-x 2,843 overlap.cpp
- - rwxr-xr-x 1,241 overlap.hpp
- - rwxr-xr-x 2,940 raredisplay.cpp
- - rwxr-xr-x 1,030 raredisplay.h
- - rwxr-xr-x 9,993 rarefact.cpp
- - rwxr-xr-x 1,038 rarefact.h
- - rwxr-xr-x 1,600 rarefactioncurvedata.h
- - rwxr-xr-x 20,239 refchimeratest.cpp
- - rwxr-xr-x 1,526 refchimeratest.h
- - rwxr-xr-x 2,786 sensspeccalc.cpp
- - rwxr-xr-x 557 sensspeccalc.hpp
- - rwxr-xr-x 25,986 seqnoise.cpp
- - rwxr-xr-x 2,947 seqnoise.h
- - rwxr-xr-x 1,256 sharedwriter.hpp
- - rwxr-xr-x 945 singlelinkage.cpp
- - rwxr-xr-x 2,379 slibshuff.cpp
- - rwxr-xr-x 428 slibshuff.h
- - rwxr-xr-x 39,707 subsample.cpp
- - rwxr-xr-x 4,317 subsample.h
- - rwxr-xr-x 47,185 summary.cpp
- - rwxr-xr-x 8,373 summary.hpp
- - rwxr-xr-x 11,275 trialSwap2.cpp
- - rwxr-xr-x 1,077 trialswap2.h
- - rw-r--r-- 151,746 trimoligos.cpp
- - rwxr-xr-x 3,759 trimoligos.h
- - rwxr-xr-x 8,915 unchecked.h
- - rwxr-xr-x 1,511 utf8.h
- - rw-r--r-- 233,738 utils.cpp
- - rw-r--r-- 15,592 utils.hpp
- - rwxr-xr-x 36,504 validcalculator.cpp
- - rwxr-xr-x 1,560 validcalculator.h
- - rw-r--r-- 13,271 validparameter.cpp
- - rwxr-xr-x 1,140 validparameter.h
- - rwxr-xr-x 71,691 venn.cpp
- - rwxr-xr-x 752 venn.h
- - rwxr-xr-x 8,644 vsearchfileparser.cpp
- - rwxr-xr-x 1,755 vsearchfileparser.h
- - rwxr-xr-x 1,384 weightedlinkage.cpp
- - rwxr-xr-x 7,483 wilcox.cpp
- - rwxr-xr-x 609 wilcox.h
- - rwxr-xr-x 615 writer.h