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mothur 1.48.1-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 13,692 kB
  • sloc: cpp: 161,866; makefile: 122; sh: 31

Folder: calculators

d .. (parent)
- - rw-r--r-- 1,600 README.txt
- - rwxr-xr-x 776 accuracy.cpp
- - rwxr-xr-x 648 accuracy.hpp
- - rw-r--r-- 4,143 ace.cpp
- - rw-r--r-- 753 ace.h
- - rwxr-xr-x 673 bergerparker.cpp
- - rwxr-xr-x 788 bergerparker.h
- - rwxr-xr-x 1,761 boneh.cpp
- - rwxr-xr-x 808 boneh.h
- - rwxr-xr-x 888 bootstrap.cpp
- - rwxr-xr-x 765 bootstrap.h
- - rwxr-xr-x 1,983 bstick.cpp
- - rwxr-xr-x 841 bstick.h
- - rw-r--r-- 18,828 calculator.cpp
- - rw-r--r-- 4,560 calculator.h
- - rwxr-xr-x 976 canberra.cpp
- - rwxr-xr-x 644 canberra.h
- - rwxr-xr-x 2,147 chao1.cpp
- - rwxr-xr-x 729 chao1.h
- - rwxr-xr-x 557 coverage.cpp
- - rwxr-xr-x 751 coverage.h
- - rwxr-xr-x 4,216 dayhoff.h
- - rw-r--r-- 2,025 diversitycalc.h
- - rw-r--r-- 46,630 diversityutils.cpp
- - rw-r--r-- 2,722 diversityutils.hpp
- - rw-r--r-- 3,835 eachgapdist.cpp
- - rwxr-xr-x 724 eachgapdist.h
- - rw-r--r-- 4,458 eachgapignore.cpp
- - rwxr-xr-x 753 eachgapignore.h
- - rwxr-xr-x 728 efron.cpp
- - rwxr-xr-x 770 efron.h
- - rw-r--r-- 1,942 erarefaction.cpp
- - rw-r--r-- 639 erarefaction.hpp
- - rwxr-xr-x 783 f1score.cpp
- - rwxr-xr-x 642 f1score.hpp
- - rwxr-xr-x 794 fdr.cpp
- - rwxr-xr-x 609 fdr.hpp
- - rwxr-xr-x 3,207 filters.h
- - rwxr-xr-x 638 fn.cpp
- - rwxr-xr-x 601 fn.hpp
- - rwxr-xr-x 639 fp.cpp
- - rwxr-xr-x 601 fp.hpp
- - rwxr-xr-x 691 fpfn.cpp
- - rwxr-xr-x 616 fpfn.hpp
- - rwxr-xr-x 2,175 geom.cpp
- - rwxr-xr-x 850 geom.h
- - rwxr-xr-x 734 goodscoverage.cpp
- - rwxr-xr-x 796 goodscoverage.h
- - rwxr-xr-x 1,384 gower.cpp
- - rwxr-xr-x 707 gower.h
- - rwxr-xr-x 914 hamming.cpp
- - rwxr-xr-x 637 hamming.h
- - rwxr-xr-x 761 heip.cpp
- - rwxr-xr-x 599 heip.h
- - rwxr-xr-x 1,085 hellinger.cpp
- - rwxr-xr-x 651 hellinger.h
- - rw-r--r-- 1,737 igabundance.cpp
- - rw-r--r-- 666 igabundance.hpp
- - rw-r--r-- 8,326 ignoregaps.cpp
- - rwxr-xr-x 1,075 ignoregaps.h
- - rw-r--r-- 2,861 igrarefaction.cpp
- - rw-r--r-- 750 igrarefaction.hpp
- - rwxr-xr-x 834 invsimpson.cpp
- - rwxr-xr-x 643 invsimpson.h
- - rwxr-xr-x 3,370 jackknife.cpp
- - rwxr-xr-x 892 jackknife.h
- - rw-r--r-- 8,805 jtt.hpp
- - rw-r--r-- 1,428 kimura.cpp
- - rw-r--r-- 846 kimura.hpp
- - rw-r--r-- 3,239 kmerdist.cpp
- - rw-r--r-- 1,058 kmerdist.hpp
- - rw-r--r-- 2,071 lnabundance.cpp
- - rw-r--r-- 657 lnabundance.hpp
- - rw-r--r-- 2,849 lnrarefaction.cpp
- - rw-r--r-- 749 lnrarefaction.hpp
- - rw-r--r-- 1,981 lnshift.cpp
- - rw-r--r-- 632 lnshift.hpp
- - rwxr-xr-x 5,755 logsd.cpp
- - rwxr-xr-x 797 logsd.h
- - rw-r--r-- 2,037 lsabundance.cpp
- - rw-r--r-- 656 lsabundance.hpp
- - rw-r--r-- 2,959 lsrarefaction.cpp
- - rw-r--r-- 700 lsrarefaction.hpp
- - rwxr-xr-x 770 manhattan.cpp
- - rwxr-xr-x 649 manhattan.h
- - rwxr-xr-x 942 mcc.cpp
- - rwxr-xr-x 609 mcc.hpp
- - rwxr-xr-x 1,368 memchi2.cpp
- - rwxr-xr-x 721 memchi2.h
- - rwxr-xr-x 1,178 memchord.cpp
- - rwxr-xr-x 645 memchord.h
- - rwxr-xr-x 828 memeuclidean.cpp
- - rwxr-xr-x 672 memeuclidean.h
- - rwxr-xr-x 1,574 mempearson.cpp
- - rwxr-xr-x 659 mempearson.h
- - rw-r--r-- 7,722 metroig.cpp
- - rw-r--r-- 773 metroig.hpp
- - rw-r--r-- 9,081 metrolognormal.cpp
- - rw-r--r-- 900 metrolognormal.hpp
- - rw-r--r-- 8,383 metrologstudent.cpp
- - rw-r--r-- 929 metrologstudent.hpp
- - rw-r--r-- 8,061 metrosichel.cpp
- - rw-r--r-- 895 metrosichel.hpp
- - rwxr-xr-x 1,081 npshannon.cpp
- - rwxr-xr-x 774 npshannon.h
- - rwxr-xr-x 817 npv.cpp
- - rwxr-xr-x 610 npv.hpp
- - rwxr-xr-x 1,203 nseqs.h
- - rwxr-xr-x 823 odum.cpp
- - rwxr-xr-x 616 odum.h
- - rw-r--r-- 5,660 onegapdist.cpp
- - rwxr-xr-x 904 onegapdist.h
- - rw-r--r-- 5,744 onegapignore.cpp
- - rwxr-xr-x 972 onegapignore.h
- - rw-r--r-- 7,693 pam.hpp
- - rwxr-xr-x 5,573 parsimony.cpp
- - rwxr-xr-x 3,246 parsimony.h
- - rw-r--r-- 9,344 pmb.hpp
- - rwxr-xr-x 817 ppv.cpp
- - rwxr-xr-x 609 ppv.hpp
- - rwxr-xr-x 6,444 prng.cpp
- - rwxr-xr-x 2,523 prng.h
- - rwxr-xr-x 1,782 qstat.cpp
- - rwxr-xr-x 757 qstat.h
- - rwxr-xr-x 760 sensitivity.cpp
- - rwxr-xr-x 681 sensitivity.hpp
- - rwxr-xr-x 1,415 shannon.cpp
- - rwxr-xr-x 763 shannon.h
- - rwxr-xr-x 810 shannoneven.cpp
- - rwxr-xr-x 648 shannoneven.h
- - rwxr-xr-x 3,136 shannonrange.cpp
- - rwxr-xr-x 1,589 shannonrange.h
- - rwxr-xr-x 3,903 sharedace.cpp
- - rwxr-xr-x 800 sharedace.h
- - rwxr-xr-x 1,234 sharedanderbergs.cpp
- - rwxr-xr-x 677 sharedanderbergs.h
- - rwxr-xr-x 1,423 sharedbraycurtis.cpp
- - rwxr-xr-x 680 sharedbraycurtis.h
- - rwxr-xr-x 7,416 sharedchao1.cpp
- - rwxr-xr-x 1,434 sharedchao1.h
- - rwxr-xr-x 868 sharedjabund.cpp
- - rwxr-xr-x 763 sharedjabund.h
- - rwxr-xr-x 5,861 sharedjackknife.cpp
- - rwxr-xr-x 1,071 sharedjackknife.h
- - rwxr-xr-x 1,250 sharedjclass.cpp
- - rwxr-xr-x 760 sharedjclass.h
- - rwxr-xr-x 1,576 sharedjest.cpp
- - rwxr-xr-x 745 sharedjest.h
- - rwxr-xr-x 1,463 sharedjsd.cpp
- - rwxr-xr-x 673 sharedjsd.h
- - rwxr-xr-x 1,826 sharedkstest.cpp
- - rwxr-xr-x 741 sharedkstest.h
- - rwxr-xr-x 1,223 sharedkulczynski.cpp
- - rwxr-xr-x 679 sharedkulczynski.h
- - rwxr-xr-x 1,250 sharedkulczynskicody.cpp
- - rwxr-xr-x 709 sharedkulczynskicody.h
- - rwxr-xr-x 1,320 sharedlennon.cpp
- - rwxr-xr-x 653 sharedlennon.h
- - rwxr-xr-x 985 sharedmarczewski.cpp
- - rwxr-xr-x 711 sharedmarczewski.h
- - rwxr-xr-x 1,471 sharedmorisitahorn.cpp
- - rwxr-xr-x 675 sharedmorisitahorn.h
- - rwxr-xr-x 797 sharednseqs.h
- - rwxr-xr-x 1,201 sharedochiai.cpp
- - rwxr-xr-x 652 sharedochiai.h
- - rwxr-xr-x 1,553 sharedrjsd.cpp
- - rwxr-xr-x 685 sharedrjsd.h
- - rwxr-xr-x 967 sharedsobs.cpp
- - rwxr-xr-x 808 sharedsobs.h
- - rwxr-xr-x 2,107 sharedsobscollectsummary.cpp
- - rwxr-xr-x 875 sharedsobscollectsummary.h
- - rwxr-xr-x 847 sharedsorabund.cpp
- - rwxr-xr-x 778 sharedsorabund.h
- - rwxr-xr-x 1,253 sharedsorclass.cpp
- - rwxr-xr-x 781 sharedsorclass.h
- - rwxr-xr-x 1,474 sharedsorest.cpp
- - rwxr-xr-x 761 sharedsorest.h
- - rwxr-xr-x 1,686 sharedthetan.cpp
- - rwxr-xr-x 761 sharedthetan.h
- - rwxr-xr-x 2,246 sharedthetayc.cpp
- - rwxr-xr-x 770 sharedthetayc.h
- - rwxr-xr-x 774 shen.cpp
- - rwxr-xr-x 791 shen.h
- - rw-r--r-- 1,803 siabundance.cpp
- - rw-r--r-- 657 siabundance.hpp
- - rwxr-xr-x 1,598 simpson.cpp
- - rwxr-xr-x 746 simpson.h
- - rwxr-xr-x 682 simpsoneven.cpp
- - rwxr-xr-x 653 simpsoneven.h
- - rw-r--r-- 2,899 sirarefaction.cpp
- - rw-r--r-- 750 sirarefaction.hpp
- - rw-r--r-- 1,866 sishift.cpp
- - rw-r--r-- 635 sishift.hpp
- - rwxr-xr-x 967 smithwilson.cpp
- - rwxr-xr-x 648 smithwilson.h
- - rwxr-xr-x 805 sobs.h
- - rwxr-xr-x 860 soergel.cpp
- - rwxr-xr-x 638 soergel.h
- - rwxr-xr-x 684 solow.cpp
- - rwxr-xr-x 770 solow.h
- - rwxr-xr-x 1,956 spearman.cpp
- - rwxr-xr-x 648 spearman.h
- - rwxr-xr-x 992 speciesprofile.cpp
- - rwxr-xr-x 686 speciesprofile.h
- - rwxr-xr-x 753 specificity.cpp
- - rwxr-xr-x 683 specificity.hpp
- - rwxr-xr-x 1,367 structchi2.cpp
- - rwxr-xr-x 745 structchi2.h
- - rwxr-xr-x 1,180 structchord.cpp
- - rwxr-xr-x 666 structchord.h
- - rwxr-xr-x 833 structeuclidean.cpp
- - rwxr-xr-x 694 structeuclidean.h
- - rwxr-xr-x 911 structkulczynski.cpp
- - rwxr-xr-x 701 structkulczynski.h
- - rwxr-xr-x 1,282 structpearson.cpp
- - rwxr-xr-x 680 structpearson.h
- - rwxr-xr-x 631 tn.cpp
- - rwxr-xr-x 602 tn.hpp
- - rwxr-xr-x 631 tp.cpp
- - rwxr-xr-x 601 tp.hpp
- - rwxr-xr-x 664 tptn.cpp
- - rwxr-xr-x 618 tptn.hpp
- - rwxr-xr-x 1,113 treecalculator.h
- - rwxr-xr-x 18,266 unweighted.cpp
- - rwxr-xr-x 888 unweighted.h
- - rwxr-xr-x 2,808 uvest.cpp
- - rwxr-xr-x 720 uvest.h
- - rwxr-xr-x 16,257 weighted.cpp
- - rwxr-xr-x 841 weighted.h
- - rwxr-xr-x 757 whittaker.cpp
- - rwxr-xr-x 759 whittaker.h