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/*
* goodscoverage.cpp
* Mothur
*
* Created by Thomas Ryabin on 4/8/09.
* Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
*
*/
#include "goodscoverage.h"
#include "calculator.h"
/**********************************************************/
EstOutput GoodsCoverage::getValues(SAbundVector* rank){
try {
data.resize(1,0);
double numSingletons = rank->get(1);
double totalIndividuals = rank->getNumSeqs();
data[0] = 1 - numSingletons/totalIndividuals;
if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
return data;
}
catch(exception& e) {
m->errorOut(e, "GoodsCoverage", "getValues");
exit(1);
}
}
/***********************************************************************/
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