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/*
* hamming.cpp
* Mothur
*
* Created by westcott on 12/15/10.
* Copyright 2010 Schloss Lab. All rights reserved.
*
*/
#include "hamming.h"
/***********************************************************************/
EstOutput Hamming::getValues(vector<SharedRAbundVector*> shared) {
try {
data.resize(1,0);
int numA = 0;
int numB = 0;
int numShared = 0;
//calc the 2 denominators
for (int i = 0; i < shared[0]->getNumBins(); i++) {
int A = shared[0]->get(i);
int B = shared[1]->get(i);
if (A != 0) { numA++; }
if (B != 0) { numB++; }
if ((A != 0) && (B != 0)) { numShared++; }
}
data[0] = numA + numB - (2 * numShared);
if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
return data;
}
catch(exception& e) {
m->errorOut(e, "Hamming", "getValues");
exit(1);
}
}
/***********************************************************************/
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