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/*
* sharedsobscollectsummary.cpp
* Mothur
*
* Created by Sarah Westcott on 2/12/09.
* Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
*
*/
#include "sharedsobscollectsummary.h"
/***********************************************************************/
//This returns the number of shared species observed in several groups.
//The shared vector is each groups sharedrabundvector.
EstOutput SharedSobsCS::getValues(vector<SharedRAbundVector*> shared){
try {
data.resize(1,0);
double observed = 0;
int numGroups = shared.size();
for (int i = 0; i < shared[0]->getNumBins(); i++) {
//get bin values and set sharedByAll
bool sharedByAll = true;
for (int j = 0; j < numGroups; j++) {
if (shared[j]->get(i) == 0) { sharedByAll = false; }
}
//they are shared
if (sharedByAll ) { observed++; }
}
data[0] = observed;
return data;
}
catch(exception& e) {
m->errorOut(e, "SharedSobsCS", "getValues");
exit(1);
}
}
/***********************************************************************/
//This returns the number of shared species observed in several groups.
//The shared vector is each groups sharedrabundvector.
EstOutput SharedSobsCS::getValues(vector<SharedRAbundVector*> shared, vector<string>& labels, vector<string> otuNames){
try {
data.resize(1,0);
double observed = 0;
int numGroups = shared.size();
labels.clear();
for (int i = 0; i < shared[0]->getNumBins(); i++) {
//get bin values and set sharedByAll
bool sharedByAll = true;
for (int j = 0; j < numGroups; j++) {
if (shared[j]->get(i) == 0) { sharedByAll = false; }
}
//they are shared
if (sharedByAll == true) { observed++; labels.push_back(otuNames[i]); }
}
data[0] = observed;
return data;
}
catch(exception& e) {
m->errorOut(e, "SharedSobsCS", "getValues");
exit(1);
}
}
/***********************************************************************/
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