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/*
* heatmapsim.cpp
* Mothur
*
* Created by Sarah Westcott on 6/8/09.
* Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
*
*/
#include "heatmapsim.h"
#include "sharedjabund.h"
#include "sharedsorabund.h"
#include "sharedjclass.h"
#include "sharedsorclass.h"
#include "sharedjest.h"
#include "sharedsorest.h"
#include "sharedthetayc.h"
#include "sharedthetan.h"
#include "sharedmorisitahorn.h"
#include "sharedbraycurtis.h"
#include "sharedrabundvectors.hpp"
//**********************************************************************************************************************
HeatMapSim::HeatMapSim(string dir, string i, int f) : outputDir(dir), inputfile(i), fontSize(f) {
m = MothurOut::getInstance();
}
//**********************************************************************************************************************
vector<string> HeatMapSim::getPic(SharedRAbundVectors*& allLookup, vector<Calculator*> calcs, vector<string> groups) {
try {
EstOutput data;
vector<double> sims;
vector<string> outputNames;
vector<SharedRAbundVector*> lookup = allLookup->getSharedRAbundVectors();
//make file for each calculator selected
for (int k = 0; k < calcs.size(); k++) {
if (m->getControl_pressed()) { for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; } return outputNames; }
string filenamesvg = outputDir + util.getRootName(util.getSimpleName(inputfile)) + lookup[0]->getLabel() + "." + calcs[k]->getName() + ".heatmap.sim.svg";
util.openOutputFile(filenamesvg, outsvg);
outputNames.push_back(filenamesvg);
//svg image
outsvg << "<svg xmlns:svg=\"http://www.w3.org/2000/svg\" xmlns=\"http://www.w3.org/2000/svg\" width=\"100%\" height=\"100%\" viewBox=\"0 0 " + toString((lookup.size() * 150) + 160) + " " + toString((lookup.size() * 150) + 160) + "\">\n";
outsvg << "<g>\n";
//white backround
outsvg << "<rect fill=\"white\" stroke=\"white\" x=\"0\" y=\"0\" width=\"" + toString((lookup.size() * 150) + 160) + "\" height=\"" + toString((lookup.size() * 150) + 160) + "\"/>";
outsvg << "<text fill=\"black\" class=\"seri\" font-size=\"" + toString(fontSize) + "\" x=\"" + toString((lookup.size() * 75) - 40) + "\" y=\"25\">Heatmap at distance " + lookup[0]->getLabel() + "</text>\n";
//column labels
for (int h = 0; h < lookup.size(); h++) {
outsvg << "<text fill=\"black\" class=\"seri\" font-size=\"" + toString(fontSize) + "\" x=\"" + toString(((150 * (h+1)) ) - ((int)groups[h].length() / 2)) + "\" y=\"50\">" + groups[h] + "</text>\n";
outsvg << "<text fill=\"black\" class=\"seri\" font-size=\"" + toString(fontSize) + "\" y=\"" + toString(((150 * (h+1)) ) - ((int)groups[h].length() / 2)) + "\" x=\"50\">" + groups[h] + "</text>\n";
}
sims.clear();
double biggest = 0;
double smallest = 10000000;
//float scaler;
//get sim for each comparison and save them so you can find the relative similairity
for(int i = 0; i < (lookup.size()-1); i++){
for(int j = (i+1); j < lookup.size(); j++){
if (m->getControl_pressed()) { outsvg.close(); for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; } return outputNames; }
vector<SharedRAbundVector*> subset;
subset.push_back(lookup[i]); subset.push_back(lookup[j]);
//get similairity between groups
data = calcs[k]->getValues(subset);
sims.push_back(1.0 - data[0]);
//save biggest similairity to set relative sim
if ((1.0 - data[0]) > biggest) { biggest = (1.0 - data[0]); }
//save smalllest similairity to set relative sim
if ((1.0 - data[0]) < smallest) { smallest = (1.0 - data[0]); }
}
}
//map biggest similairity found to red
float scalerBig = 255.0 / biggest;
int count = 0;
//output similairites to file
for(int i = 0; i < (lookup.size()-1); i++){
for(int j = (i+1); j < lookup.size(); j++){
//find relative color
int color = scalerBig * sims[count];
//draw box
outsvg << "<rect fill=\"rgb(" + toString(color) + ",0,0)\" stroke=\"rgb(" + toString(color) + ",0,0)\" x=\"" + toString((i*150)+80) + "\" y=\"" + toString((j*150)+75) + "\" width=\"150\" height=\"150\"/>\n";
count++;
}
}
int y = ((lookup.size() * 150) + 120);
printLegend(y, biggest, smallest);
outsvg << "</g>\n</svg>\n";
outsvg.close();
}
for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; }
return outputNames;
}
catch(exception& e) {
m->errorOut(e, "HeatMapSim", "getPic");
exit(1);
}
}
//**********************************************************************************************************************
string HeatMapSim::getPic(vector< vector<double> > dists, vector<string> groups) {
try {
vector<double> sims;
string filenamesvg = outputDir + util.getRootName(util.getSimpleName(inputfile)) + "heatmap.sim.svg";
util.openOutputFile(filenamesvg, outsvg);
//svg image
outsvg << "<svg xmlns:svg=\"http://www.w3.org/2000/svg\" xmlns=\"http://www.w3.org/2000/svg\" width=\"100%\" height=\"100%\" viewBox=\"0 0 " + toString((dists.size() * 150) + 160) + " " + toString((dists.size() * 150) + 160) + "\">\n";
outsvg << "<g>\n";
//white backround
outsvg << "<rect fill=\"white\" stroke=\"white\" x=\"0\" y=\"0\" width=\"" + toString((dists.size() * 150) + 160) + "\" height=\"" + toString((dists.size() * 150) + 160) + "\"/>";
outsvg << "<text fill=\"black\" class=\"seri\" font-size=\"" + toString(fontSize) + "\" x=\"" + toString((dists.size() * 75) - 40) + "\" y=\"25\">Heatmap for " + inputfile + "</text>\n";
//column labels
for (int h = 0; h < groups.size(); h++) {
outsvg << "<text fill=\"black\" class=\"seri\" font-size=\"" + toString(fontSize) + "\" x=\"" + toString(((150 * (h+1)) ) - ((int)groups[h].length() / 2)) + "\" y=\"50\">" + groups[h] + "</text>\n";
outsvg << "<text fill=\"black\" class=\"seri\" font-size=\"" + toString(fontSize) + "\" y=\"" + toString(((150 * (h+1)) ) - ((int)groups[h].length() / 2)) + "\" x=\"50\">" + groups[h] + "</text>\n";
}
double biggest = -1;
double smallest = 10000000;
float scaler;
//get sim for each comparison and save them so you can find the relative similairity
for(int i = 0; i < (dists.size()-1); i++){
for(int j = (i+1); j < dists.size(); j++){
if (m->getControl_pressed()) { outsvg.close(); return filenamesvg; }
float sim = 1.0 - dists[i][j];
sims.push_back(sim);
//save biggest similairity to set relative sim
if (sim > biggest) { biggest = sim; }
//save smalllest similairity to set relative sim
if (sim < smallest) { smallest = sim; }
}
}
//map biggest similairity found to red
scaler = 255.0 / biggest;
int count = 0;
//output similairites to file
for(int i = 0; i < (dists.size()-1); i++){
for(int j = (i+1); j < dists.size(); j++){
//find relative color
int color = scaler * sims[count];
//draw box
outsvg << "<rect fill=\"rgb(" + toString(color) + ",0,0)\" stroke=\"rgb(" + toString(color) + ",0,0)\" x=\"" + toString((i*150)+80) + "\" y=\"" + toString((j*150)+75) + "\" width=\"150\" height=\"150\"/>\n";
count++;
}
}
int y = ((dists.size() * 150) + 120);
printLegend(y, biggest, smallest);
outsvg << "</g>\n</svg>\n";
outsvg.close();
return filenamesvg;
}
catch(exception& e) {
m->errorOut(e, "HeatMapSim", "getPic");
exit(1);
}
}
//**********************************************************************************************************************
void HeatMapSim::printLegend(int y, float maxSim, float minSim) {
try {
//output legend and color labels
//go through map and give each score a color value
string color;
int x = 10;
//prints legend
for (int i = 1; i < 255; i++) {
color = toHex(int((float)(i)));
outsvg << "<rect fill=\"#" + color + "0000\" stroke=\"#" + color + "0000\" x=\"" + toString(x) + "\" y=\"" + toString(y) + "\" width=\"3\" height=\"30\"/>\n";
x += 3;
}
float scaler = (maxSim-minSim) / 5.0;
//prints legend labels
x = 0;
for (int i = 0; i<=5; i++) {
float label = scaler*i;
label = int(label * 1000 + 0.5);
label /= 1000.0;
string text = toString(label);
outsvg << "<text fill=\"black\" class=\"seri\" font-size=\"" + toString(fontSize) + "\" x=\"" + toString(x) + "\" y=\"" + toString(y-3) + "\">" + text + "</text>\n";
x += 153;
}
}
catch(exception& e) {
m->errorOut(e, "HeatMapSim", "printLegend");
exit(1);
}
}
//**********************************************************************************************************************
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