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/*
* commandoptionparser.cpp
*
*
* Created by Pat Schloss on 10/23/08.
* Copyright 2008 Patrick D. Schloss. All rights reserved.
*
*/
#include "commandoptionparser.hpp"
//**********************************************************************************************************************
//This Function parses through the command line and pulls out the command then sends the options to the parseGlobalData
CommandOptionParser::CommandOptionParser(string input){
try {
m = MothurOut::getInstance();
CurrentFile* current = CurrentFile::getInstance();
int openParen = input.find_first_of('(');
int closeParen = input.find_last_of(')');
optionString = "";
commandString = "";
if(openParen != string::npos && closeParen != string::npos){
//gobble extra spaces
int spot = 0;
for (int i = 0; i < input.length(); i++) { if (!(isspace(input[i]))) { spot = i; break; } }
if (spot > openParen) { spot = 0; }
commandString = input.substr(spot, openParen-spot); //commandString contains everything before "("
optionString = input.substr((openParen+1), (closeParen-openParen-1)); //optionString contains everything between "(" and ")".
if (!(commandString == "set.logfile")) {
if (m->getLogFileName() == "") {
time_t ltime = time(nullptr); /* calendar time */
string outputPath = current->getOutputDir();
string logFileName = outputPath + "mothur." + toString(ltime) + ".logfile";
m->setLogFileName(logFileName, false);
}
}
}
else if (openParen == -1) { m->mothurOut("[ERROR]: You are missing (\n"); }
else if (closeParen == -1) { m->mothurOut("[ERROR]: You are missing )\n"); }
}
catch(exception& e) {
m->errorOut(e, "CommandOptionParser", "CommandOptionParser");
exit(1);
}
}
//**********************************************************************************************************************
string CommandOptionParser::getCommandString() { return commandString; }
//**********************************************************************************************************************
string CommandOptionParser::getOptionString() { return optionString; }
//**********************************************************************************************************************
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