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mothur 1.48.1-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 13,692 kB
  • sloc: cpp: 161,866; makefile: 122; sh: 31

Folder: uchime_src

d .. (parent)
- - rwxr-xr-x 1,095 addtargets2.cpp
- - rwxr-xr-x 14,948 alignchime.cpp
- - rw-r--r-- 8,720 alignchimel.cpp
- - rwxr-xr-x 275 allocs.h
- - rwxr-xr-x 570 alnheuristics.h
- - rwxr-xr-x 8,204 alnparams.cpp
- - rwxr-xr-x 1,245 alnparams.h
- - rwxr-xr-x 70,910 alpha.cpp
- - rwxr-xr-x 1,473 alpha.h
- - rwxr-xr-x 2,258 alpha2.cpp
- - rwxr-xr-x 1,971 chainer.h
- - rwxr-xr-x 2,198 chime.h
- - rwxr-xr-x 597 counters.h
- - rwxr-xr-x 4,440 diagbox.h
- - rwxr-xr-x 5,094 dp.h
- - rwxr-xr-x 1,030 evalue.h
- - rwxr-xr-x 9,261 fractid.cpp
- - rwxr-xr-x 1,890 getparents.cpp
- - rwxr-xr-x 1,005 globalalign2.cpp
- - rwxr-xr-x 4,993 help.h
- - rwxr-xr-x 2,041 hsp.h
- - rwxr-xr-x 187 hspfinder.h
- - rwxr-xr-x 3,493 make3way.cpp
- - rw-r--r-- 800 makefile
- - rwxr-xr-x 6,947 mx.cpp
- - rwxr-xr-x 10,100 mx.h
- - rwxr-xr-x 6,111 myopts.h
- - rwxr-xr-x 42,418 myutils.cpp
- - rwxr-xr-x 7,758 myutils.h
- - rwxr-xr-x 1,019 orf.h
- - rwxr-xr-x 3,248 out.h
- - rwxr-xr-x 3,039 path.cpp
- - rwxr-xr-x 885 path.h
- - rwxr-xr-x 6,700 searchchime.cpp
- - rwxr-xr-x 674 seq.h
- - rwxr-xr-x 6,654 seqdb.cpp
- - rwxr-xr-x 2,231 seqdb.h
- - rwxr-xr-x 1,594 setnucmx.cpp
- - rwxr-xr-x 10,203 sfasta.cpp
- - rwxr-xr-x 2,043 sfasta.h
- - rwxr-xr-x 447 svnmods.h
- - rwxr-xr-x 5 svnversion.h
- - rwxr-xr-x 2,803 timers.h
- - rwxr-xr-x 5,392 timing.h
- - rwxr-xr-x 3,014 tracebackbit.cpp
- - rwxr-xr-x 1,920 uc.h
- - rwxr-xr-x 4,646 uchime_main.cpp
- - rwxr-xr-x 121 ultra.h
- - rwxr-xr-x 1,818 usort.cpp
- - rwxr-xr-x 7,260 viterbifast.cpp
- - rwxr-xr-x 1,984 windex.h
- - rwxr-xr-x 7,234 writechhit.cpp