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mothur 1.48.1-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 13,692 kB
  • sloc: cpp: 161,866; makefile: 122; sh: 31

Folder: datastructures

d .. (parent)
- - rwxr-xr-x 10,869 alignment.cpp
- - rwxr-xr-x 1,699 alignment.hpp
- - rwxr-xr-x 733 alignmentcell.cpp
- - rwxr-xr-x 835 alignmentcell.hpp
- - rwxr-xr-x 5,847 alignmentdb.cpp
- - rwxr-xr-x 1,040 alignmentdb.h
- - rw-r--r-- 8,783 aminoacid.cpp
- - rw-r--r-- 2,577 aminoacid.hpp
- - rw-r--r-- 2,648 biom.cpp
- - rw-r--r-- 2,309 biom.hpp
- - rw-r--r-- 48,468 biomhdf5.cpp
- - rw-r--r-- 4,535 biomhdf5.hpp
- - rw-r--r-- 43,279 biomsimple.cpp
- - rw-r--r-- 985 biomsimple.hpp
- - rw-r--r-- 1,156 compare.h
- - rw-r--r-- 3,393 contigsreport.cpp
- - rw-r--r-- 2,225 contigsreport.hpp
- - rw-r--r-- 90,361 counttable.cpp
- - rwxr-xr-x 10,015 counttable.h
- - rwxr-xr-x 1,709 datavector.hpp
- - rwxr-xr-x 25,387 designmap.cpp
- - rwxr-xr-x 4,425 designmap.h
- - rwxr-xr-x 4,032 distancedb.cpp
- - rwxr-xr-x 749 distancedb.hpp
- - rwxr-xr-x 5,594 fastamap.cpp
- - rwxr-xr-x 1,733 fastamap.h
- - rwxr-xr-x 15,107 fastqread.cpp
- - rwxr-xr-x 2,181 fastqread.h
- - rw-r--r-- 11,283 filefile.cpp
- - rw-r--r-- 2,649 filefile.hpp
- - rwxr-xr-x 8,926 flowdata.cpp
- - rwxr-xr-x 931 flowdata.h
- - rwxr-xr-x 6,505 fullmatrix.cpp
- - rwxr-xr-x 1,347 fullmatrix.h
- - rwxr-xr-x 27,180 groupmap.cpp
- - rwxr-xr-x 3,587 groupmap.h
- - rwxr-xr-x 6,767 kmer.cpp
- - rwxr-xr-x 765 kmer.hpp
- - rwxr-xr-x 5,854 kmeralign.cpp
- - rwxr-xr-x 959 kmeralign.h
- - rwxr-xr-x 9,559 kmerdb.cpp
- - rwxr-xr-x 1,651 kmerdb.hpp
- - rwxr-xr-x 17,896 listvector.cpp
- - rw-r--r-- 2,172 listvector.hpp
- - rwxr-xr-x 3,435 nameassignment.cpp
- - rwxr-xr-x 498 nameassignment.hpp
- - rwxr-xr-x 39,479 oligos.cpp
- - rwxr-xr-x 3,347 oligos.h
- - rw-r--r-- 27,859 optiblastmatrix.cpp
- - rw-r--r-- 925 optiblastmatrix.hpp
- - rw-r--r-- 5,553 optidata.cpp
- - rw-r--r-- 3,427 optidata.hpp
- - rw-r--r-- 10,148 optidb.cpp
- - rw-r--r-- 1,708 optidb.hpp
- - rwxr-xr-x 13,023 optimatrix.cpp
- - rwxr-xr-x 793 optimatrix.h
- - rw-r--r-- 45,220 optirefmatrix.cpp
- - rw-r--r-- 4,330 optirefmatrix.hpp
- - rwxr-xr-x 5,177 ordervector.cpp
- - rwxr-xr-x 1,793 ordervector.hpp
- - rw-r--r-- 16,647 picrust.cpp
- - rw-r--r-- 1,026 picrust.hpp
- - rw-r--r-- 23,642 protein.cpp
- - rw-r--r-- 2,857 protein.hpp
- - rw-r--r-- 2,789 proteindb.cpp
- - rw-r--r-- 879 proteindb.hpp
- - rwxr-xr-x 19,104 qualityscores.cpp
- - rwxr-xr-x 2,079 qualityscores.h
- - rwxr-xr-x 9,381 rabundfloatvector.cpp
- - rwxr-xr-x 2,262 rabundfloatvector.hpp
- - rwxr-xr-x 8,931 rabundvector.cpp
- - rwxr-xr-x 1,831 rabundvector.hpp
- - rw-r--r-- 1,265 report.cpp
- - rw-r--r-- 888 report.hpp
- - rwxr-xr-x 5,348 sabundvector.cpp
- - rw-r--r-- 1,625 sabundvector.hpp
- - rwxr-xr-x 2,614 searchdatabase.hpp
- - rwxr-xr-x 26,378 sequence.cpp
- - rwxr-xr-x 3,000 sequence.hpp
- - rw-r--r-- 3,513 sequencecountparser.cpp
- - rwxr-xr-x 1,275 sequencecountparser.h
- - rwxr-xr-x 6,811 sequencedb.cpp
- - rwxr-xr-x 1,308 sequencedb.h
- - rwxr-xr-x 6,970 sequenceparser.cpp
- - rwxr-xr-x 1,651 sequenceparser.h
- - rw-r--r-- 8,597 sffheader.cpp
- - rw-r--r-- 4,578 sffheader.hpp
- - rw-r--r-- 17,368 sffread.cpp
- - rw-r--r-- 4,452 sffread.hpp
- - rw-r--r-- 6,167 sharedclrvector.cpp
- - rw-r--r-- 1,996 sharedclrvector.hpp
- - rw-r--r-- 18,330 sharedclrvectors.cpp
- - rw-r--r-- 3,662 sharedclrvectors.hpp
- - rwxr-xr-x 15,065 sharedlistvector.cpp
- - rwxr-xr-x 2,536 sharedlistvector.h
- - rwxr-xr-x 11,002 sharedordervector.cpp
- - rwxr-xr-x 2,651 sharedordervector.h
- - rwxr-xr-x 8,890 sharedrabundfloatvector.cpp
- - rwxr-xr-x 2,773 sharedrabundfloatvector.hpp
- - rwxr-xr-x 21,306 sharedrabundfloatvectors.cpp
- - rwxr-xr-x 3,680 sharedrabundfloatvectors.hpp
- - rwxr-xr-x 9,346 sharedrabundvector.cpp
- - rwxr-xr-x 2,799 sharedrabundvector.hpp
- - rw-r--r-- 26,032 sharedrabundvectors.cpp
- - rwxr-xr-x 3,950 sharedrabundvectors.hpp
- - rwxr-xr-x 6,597 sparsedistancematrix.cpp
- - rwxr-xr-x 1,179 sparsedistancematrix.h
- - rwxr-xr-x 4,762 sparsematrix.cpp
- - rwxr-xr-x 996 sparsematrix.hpp
- - rw-r--r-- 1,001 storagedatabase.hpp
- - rwxr-xr-x 3,242 suffixdb.cpp
- - rwxr-xr-x 1,305 suffixdb.hpp
- - rwxr-xr-x 4,600 suffixnodes.cpp
- - rwxr-xr-x 2,902 suffixnodes.hpp
- - rwxr-xr-x 12,449 suffixtree.cpp
- - rwxr-xr-x 2,130 suffixtree.hpp
- - rw-r--r-- 6,078 taxonomy.cpp
- - rw-r--r-- 1,637 taxonomy.hpp
- - rwxr-xr-x 39,515 tree.cpp
- - rwxr-xr-x 3,152 tree.h
- - rwxr-xr-x 12,745 treemap.cpp
- - rwxr-xr-x 1,950 treemap.h
- - rwxr-xr-x 2,859 treenode.cpp
- - rwxr-xr-x 1,740 treenode.h