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//
// rabundfloatvector.hpp
// Mothur
//
// Created by Sarah Westcott on 5/15/17.
// Copyright © 2017 Schloss Lab. All rights reserved.
//
#ifndef rabundfloatvector_hpp
#define rabundfloatvector_hpp
#include "datavector.hpp"
/* Data Structure for a rabund file.
This class is a child to datavector. It represents OTU information at a certain distance.
A rabundvector can be converted into and ordervector, listvector or sabundvector.
Each member of the internal container "data" represents an individual OTU.
So data[0] = 6, because there are six member in that OTU.
example: listvector = a,b,c,d,e,f g,h,i j,k l m
rabundvector = 6 3 2 1 1
sabundvector = 2 1 1 0 0 1
ordervector = 1 1 1 1 1 1 2 2 2 3 3 4 5 */
class RAbundFloatVector : public DataVector {
public:
RAbundFloatVector();
RAbundFloatVector(int);
RAbundFloatVector(vector<float>, float, int, float);
RAbundFloatVector(string, vector<float>);
RAbundFloatVector(const RAbundFloatVector& bv) : DataVector(bv), data(bv.data), maxRank(bv.maxRank), numBins(bv.numBins), numSeqs(bv.numSeqs), group(bv.group) {};
RAbundFloatVector(ifstream&);
RAbundFloatVector(ifstream& f, string l, string g); //label, group
~RAbundFloatVector();
int getNumBins();
float getNumSeqs();
float getMaxRank();
void set(int, float);
float get(int);
vector<float> get() { return data; }
void push_back(float);
float remove(int);
void pop_back();
void resize(int);
int size();
void quicksort();
float sum();
float sum(int);
int numNZ();
void clear();
vector<float>::reverse_iterator rbegin();
vector<float>::reverse_iterator rend();
void print(ostream&);
void nonSortedPrint(ostream&);
RAbundFloatVector getRAbundFloatVector();
RAbundVector getRAbundVector();
SAbundVector getSAbundVector();
OrderVector getOrderVector(map<string,int>* hold = nullptr);
string getGroup() { return group; } //group = "" for rabunds without groupInfo
void setGroup(string g) { group = g; }
private:
vector<float> data;
float maxRank;
int numBins;
float numSeqs;
string group;
};
#endif /* rabundfloatvector_hpp */
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