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//
// sharedclrvector.hpp
// Mothur
//
// Created by Sarah Westcott on 1/21/20.
// Copyright © 2020 Schloss Lab. All rights reserved.
//
#ifndef sharedclrvector_hpp
#define sharedclrvector_hpp
#include "datavector.hpp"
#include "rabundvector.hpp"
#include "sabundvector.hpp"
#include "ordervector.hpp"
class SharedCLRVector : public DataVector {
public:
SharedCLRVector();
SharedCLRVector(int);
SharedCLRVector(vector<float>, float, int, float); //maxRank, numbins, numSeqs
SharedCLRVector(vector<float>);
SharedCLRVector(const SharedCLRVector& bv) : DataVector(bv), data(bv.data), maxRank(bv.maxRank), numBins(bv.numBins), numSeqs(bv.numSeqs), group(bv.group) {};
SharedCLRVector(ifstream&);
SharedCLRVector(ifstream& f, string l, string g, int); //filehandle, label
~SharedCLRVector(){}
int getNumBins() { return numBins; }
float getNumSeqs() { return numSeqs; }
float getMaxRank() { return maxRank; }
float remove(int);
float remove(vector<int>);
void set(int, float);
float get(int);
vector<float> get() { return data; }
void push_back(float);
void resize(int);
int size();
void clear();
void print(ostream&); //nonsorted
string getGroup() { return group; } //group = "" for rabunds without groupInfo
void setGroup(string g) { group = g; }
RAbundVector getRAbundVector() { m->mothurOut("[ERROR]: can not use getRAbundVector for SharedCLRVector.\n"); RAbundVector r; return r; }
SAbundVector getSAbundVector() { m->mothurOut("[ERROR]: can not use getSAbundVector for SharedCLRVector.\n"); SAbundVector s; return s; }
OrderVector getOrderVector(map<string,int>* hold = nullptr) { m->mothurOut("[ERROR]: can not use getOrderVector for SharedCLRVector.\n"); OrderVector o; return o; }
private:
vector<float> data;
float maxRank;
int numBins;
float numSeqs;
string group;
};
#endif /* sharedclrvector_hpp */
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