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/*
* fileoutput.cpp
* Dotur
*
* Created by Sarah Westcott on 11/18/08.
* Copyright 2008 Schloss Lab UMASS Amherst. All rights reserved.
*
*/
#include "fileoutput.h"
/***********************************************************************/
void ThreeColumnFile::setLabelName(string label){
try {
if(!firstLabel) { fileHeader += "\t" + label + "\tlci\thci"; }
else { fileHeader = "numsampled\t" + label + "\tlci\thci"; }
}
catch(exception& e) {
m->errorOut(e, "ThreeColumnFile", "setLabelName");
exit(1);
}
}
/***********************************************************************/
void ThreeColumnFile::updateOutput(int nSeqs, vector<double> data){
try {
map<int, int>::iterator it = nseqsToRow.find(nSeqs);
if (it != nseqsToRow.end()) { //new column in row for next label
int resultsIndex = it->second;
results[resultsIndex].push_back(data[0]);
results[resultsIndex].push_back(data[1]);
results[resultsIndex].push_back(data[2]);
}else{
//new row
nseqsToRow[nSeqs] = results.size();
vector<double> theseResults;
theseResults.push_back(nSeqs);
theseResults.push_back(data[0]);
theseResults.push_back(data[1]);
theseResults.push_back(data[2]);
results.push_back(theseResults);
}
}
catch(exception& e) {
m->errorOut(e, "ThreeColumnFile", "updateOutput");
exit(1);
}
}
/***********************************************************************/
void ColumnFile::setLabelName(string label, vector<string> tags){
try {
if(firstLabel){ fileHeader = ""; }
for(int i = 0; i < tags.size(); i++) { fileHeader += label + tags[i] + '\t'; }
}
catch(exception& e) {
m->errorOut(e, "ColumnFile", "setLabelName");
exit(1);
}
}
/***********************************************************************/
void ColumnFile::updateOutput(vector<double> data){
try {
vector<double> theseResults;
for (size_t i = 0; i < data.size(); i++) { theseResults.push_back(data[i]); }
results.push_back(theseResults);
}
catch(exception& e) {
m->errorOut(e, "ColumnFile", "updateOutput");
exit(1);
}
}
/***********************************************************************/
void FileOutput::printFile(){
try {
ofstream outFile;
util.openOutputFile(filename, outFile);
outFile.setf(ios::fixed, ios::floatfield); outFile.setf(ios::showpoint);
cout.setf(ios::fixed, ios::floatfield); cout.setf(ios::showpoint);
outFile << fileHeader << endl;
for (size_t i = 0; i < results.size(); i++) {
for (size_t j = 0; j < results[i].size(); j++) {
outFile << setprecision(6) << results[i][j] << '\t';
}
outFile << endl;
}
outFile << endl;
outFile.close();
}
catch(exception& e) {
m->errorOut(e, "FileOutput", "printFile");
exit(1);
}
}
/***********************************************************************/
void SharedThreeColumnFile::setLabelName(string label){
try {
if (groupLabel != "") { groupLabel = "_" + groupLabel; }
if(!firstLabel) { fileHeader += "\t" + label + groupLabel + "\tlci" + groupLabel + "\thci"+ groupLabel; }
else { fileHeader = "numsampled\t" + label + groupLabel + "\tlci" + groupLabel + "\thci"+ groupLabel; }
}
catch(exception& e) {
m->errorOut(e, "SharedThreeColumnFile", "setLabelName");
exit(1);
}
}
/***********************************************************************/
void SharedThreeColumnFile::updateOutput(int nSeqs, vector<double> data){
try {
map<int, int>::iterator it = nseqsToRow.find(nSeqs);
if (it != nseqsToRow.end()) { //new column in row for next label
int resultsIndex = it->second;
results[resultsIndex].push_back(data[0]);
results[resultsIndex].push_back(data[1]);
results[resultsIndex].push_back(data[2]);
}else{ //new row
nseqsToRow[nSeqs] = results.size();
vector<double> theseResults;
theseResults.push_back(numGroup); numGroup++;
theseResults.push_back(data[0]);
theseResults.push_back(data[1]);
theseResults.push_back(data[2]);
results.push_back(theseResults);
}
}
catch(exception& e) {
m->errorOut(e, "SharedThreeColumnFile", "output");
exit(1);
}
}
/***********************************************************************/
void OneColumnFile::setLabelName(string label){
try {
if(!firstLabel) { fileHeader += "\t" + label; }
else { fileHeader = "numsampled\t" + label; }
}
catch(exception& e) {
m->errorOut(e, "OneColumnFile", "setLabelName");
exit(1);
}
}
/***********************************************************************/
void OneColumnFile::updateOutput(int nSeqs, vector<double> data){
try {
map<int, int>::iterator it = nseqsToRow.find(nSeqs);
if (it != nseqsToRow.end()) { //new column in row for next label
int resultsIndex = it->second;
results[resultsIndex].push_back(data[0]);
}else{
//new row
nseqsToRow[nSeqs] = results.size();
vector<double> theseResults;
theseResults.push_back(nSeqs);
theseResults.push_back(data[0]);
results.push_back(theseResults);
}
}
catch(exception& e) {
m->errorOut(e, "OneColumnFile", "updateOutput");
exit(1);
}
}
/***********************************************************************/
void SharedOneColumnFile::setLabelName(string label){
try {
if(!firstLabel) { fileHeader += "\t" + label; }
else { fileHeader = "sampled\t" + label; }
}
catch(exception& e) {
m->errorOut(e, "SharedOneColumnFile", "setLabelName");
exit(1);
}
}
/***********************************************************************/
void SharedOneColumnFile::updateOutput(int nSeqs, vector<double> data){
try {
map<int, int>::iterator it = nseqsToRow.find(nSeqs);
if (it != nseqsToRow.end()) { //new column in row for next label
int resultsIndex = it->second;
for (int i = 0; i < data.size(); i++) { results[resultsIndex].push_back(data[i]); }
}else{
//new row
nseqsToRow[nSeqs] = results.size();
vector<double> theseResults;
theseResults.push_back(nSeqs);
for (int i = 0; i < data.size(); i++) { theseResults.push_back(data[i]); }
results.push_back(theseResults);
}
}
catch(exception& e) {
m->errorOut(e, "SharedOneColumnFile", "updateOutput");
exit(1);
}
}
/***********************************************************************/
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