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#ifndef SETDIRCOMMAND_H
#define SETDIRCOMMAND_H
/*
* setoutdircommand.h
* Mothur
*
* Created by westcott on 1/21/10.
* Copyright 2010 Schloss Lab. All rights reserved.
*
*/
#include "command.hpp"
#include "commandfactory.hpp"
/**********************************************************/
class SetDirectoryCommand : public Command {
public:
SetDirectoryCommand(string);
~SetDirectoryCommand(){}
vector<string> setParameters();
string getCommandName() { return "set.dir"; }
string getCommandCategory() { return "General"; }
string getHelpString();
string getOutputPattern(string){ return ""; }
string getCitation() { return "http://www.mothur.org/wiki/Set.dir"; }
string getDescription() { return "set various directories"; }
int execute();
void help() { m->mothurOut(getHelpString()); }
private:
string output, input, mothurfiles, toolsLocation;
bool abort, debugorSeedOnly, modifyNames;
int random;
vector<string> outputNames;
};
/**********************************************************/
#endif
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