File: snippy.md

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---
Name: Snippy
URL: https://github.com/tseemann/snippy
Description: >
  Rapid haploid variant calling and core genome alignment.
---

The Snippy module parses output generated by
[snippy](https://github.com/tseemann/snippy). The following commands are implemented:

- `snippy`
  - Variant type descriptive statistics.
  - Parses summary `prefix.txt` file that is generated.
- `snippy-core`
  - Core genome alignment descriptive statistics.
  - Parses summary `prefix.txt` file that is generated.