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<?xml version="1.0" encoding="ISO-8859-1"?>
<?xml-stylesheet type="text/xsl" href="file:///C:/dev/OpenMS/share/OpenMS/XSL/ConsensusXML.xsl"?>
<consensusXML version="1.5" experiment_type="silac" xsi:noNamespaceSchemaLocation="http://open-ms.sourceforge.net/schemas/ConsensusXML_1_4.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<dataProcessing completion_time="2012-03-02T15:44:17">
<software name="IDMapper" version="1.10.0" />
<processingAction name="Identification mapping" />
<userParam type="string" name="parameter: out" value="SILAC_1_1.consensusXML"/>
<userParam type="string" name="parameter: in" value="SILAC_1_1.consensusXML"/>
<userParam type="string" name="parameter: id" value="SILAC_1_1.idXML"/>
<userParam type="string" name="parameter: ini" value="IDMapper.ini"/>
<userParam type="float" name="parameter: rt_tolerance" value="60"/>
<userParam type="float" name="parameter: mz_tolerance" value="40"/>
<userParam type="string" name="parameter: mz_measure" value="ppm"/>
<userParam type="string" name="parameter: mz_reference" value="precursor"/>
<userParam type="string" name="parameter: ignore_charge" value="true"/>
<userParam type="string" name="parameter: use_centroid_rt" value="false"/>
<userParam type="string" name="parameter: use_centroid_mz" value="false"/>
<userParam type="string" name="parameter: use_subelements" value="false"/>
<userParam type="string" name="parameter: log" value=""/>
<userParam type="int" name="parameter: debug" value="0"/>
<userParam type="int" name="parameter: threads" value="8"/>
<userParam type="string" name="parameter: no_progress" value="false"/>
<userParam type="string" name="parameter: test" value="false"/>
</dataProcessing>
<dataProcessing completion_time="2012-03-02T15:44:44">
<software name="IDMapper" version="1.10.0" />
<processingAction name="Identification mapping" />
<userParam type="string" name="parameter: out" value="SILAC_1_2.consensusXML"/>
<userParam type="string" name="parameter: in" value="SILAC_1_2.consensusXML"/>
<userParam type="string" name="parameter: id" value="SILAC_1_2.idXML"/>
<userParam type="string" name="parameter: ini" value="IDMapper.ini"/>
<userParam type="float" name="parameter: rt_tolerance" value="60"/>
<userParam type="float" name="parameter: mz_tolerance" value="40"/>
<userParam type="string" name="parameter: mz_measure" value="ppm"/>
<userParam type="string" name="parameter: mz_reference" value="precursor"/>
<userParam type="string" name="parameter: ignore_charge" value="true"/>
<userParam type="string" name="parameter: use_centroid_rt" value="false"/>
<userParam type="string" name="parameter: use_centroid_mz" value="false"/>
<userParam type="string" name="parameter: use_subelements" value="false"/>
<userParam type="string" name="parameter: log" value=""/>
<userParam type="int" name="parameter: debug" value="0"/>
<userParam type="int" name="parameter: threads" value="8"/>
<userParam type="string" name="parameter: no_progress" value="false"/>
<userParam type="string" name="parameter: test" value="false"/>
</dataProcessing>
<dataProcessing completion_time="1999-12-31T23:59:59">
<software name="FileMerger" version="version_string" />
<processingAction name="File format conversion" />
<userParam type="string" name="parameter: mode" value="test_mode"/>
</dataProcessing>
<IdentificationRun id="PI_0" date="2012-02-24T16:27:55" search_engine="OMSSA" search_engine_version="2.1.8">
<SearchParameters db="sequences/human/ipi.HUMAN.v3.64.OpenMS_decoy.fasta.psq" db_version="" taxonomy="0" mass_type="monoisotopic" charges="+2-+6" enzyme="trypsin" missed_cleavages="2" precursor_peak_tolerance="15" peak_mass_tolerance="0.7" >
<FixedModification name="Carbamidomethyl (C)" />
<VariableModification name="Oxidation (M)" />
</SearchParameters>
<ProteinIdentification score_type="q-value" higher_score_better="false" significance_threshold="0">
<ProteinHit id="PH_0" accession="IPI:CON_00009865.2|SWISS-PROT:P13645" score="0.872178077697754" sequence="">
<userParam type="float" name="OMSSA_score" value="0"/>
</ProteinHit>
</ProteinIdentification>
</IdentificationRun>
<IdentificationRun id="PI_1" date="2012-02-24T17:04:02" search_engine="OMSSA" search_engine_version="2.1.8">
<SearchParameters db="sequences/human/ipi.HUMAN.v3.64.OpenMS_decoy.fasta.psq" db_version="" taxonomy="0" mass_type="monoisotopic" charges="+2-+6" enzyme="trypsin" missed_cleavages="2" precursor_peak_tolerance="15" peak_mass_tolerance="0.7" >
<FixedModification name="Carbamidomethyl (C)" />
<FixedModification name="Label:13C(6) (R)" />
<FixedModification name="Label:2H(4) (K)" />
<VariableModification name="Oxidation (M)" />
</SearchParameters>
<ProteinIdentification score_type="q-value" higher_score_better="false" significance_threshold="0">
<ProteinHit id="PH_1" accession="IPI:CON_00694255.1|TREMBL:Q3SX14" score="0.872178077697754" sequence="">
<userParam type="float" name="OMSSA_score" value="0"/>
</ProteinHit>
</ProteinIdentification>
</IdentificationRun>
<IdentificationRun id="PI_2" date="2012-02-24T21:43:39" search_engine="OMSSA" search_engine_version="2.1.8">
<SearchParameters db="sequences/human/ipi.HUMAN.v3.64.OpenMS_decoy.fasta.psq" db_version="" taxonomy="0" mass_type="monoisotopic" charges="+2-+6" enzyme="trypsin" missed_cleavages="2" precursor_peak_tolerance="15" peak_mass_tolerance="0.7" >
<FixedModification name="Carbamidomethyl (C)" />
<VariableModification name="Oxidation (M)" />
</SearchParameters>
<ProteinIdentification score_type="q-value" higher_score_better="false" significance_threshold="0">
<ProteinHit id="PH_2" accession="IPI:CON_00009867.3|SWISS-PROT:P13647" score="0.871177971363068" sequence="">
<userParam type="float" name="OMSSA_score" value="0"/>
</ProteinHit>
</ProteinIdentification>
</IdentificationRun>
<IdentificationRun id="PI_3" date="2012-02-24T22:13:44" search_engine="OMSSA" search_engine_version="2.1.8">
<SearchParameters db="sequences/human/ipi.HUMAN.v3.64.OpenMS_decoy.fasta.psq" db_version="" taxonomy="0" mass_type="monoisotopic" charges="+2-+6" enzyme="trypsin" missed_cleavages="2" precursor_peak_tolerance="15" peak_mass_tolerance="0.7" >
<FixedModification name="Carbamidomethyl (C)" />
<FixedModification name="Label:13C(6) (R)" />
<FixedModification name="Label:2H(4) (K)" />
<VariableModification name="Oxidation (M)" />
</SearchParameters>
<ProteinIdentification score_type="q-value" higher_score_better="false" significance_threshold="0">
<ProteinHit id="PH_3" accession="IPI:CON_00698900.1|SWISS-PROT:P60712" score="0.871177971363068" sequence="">
<userParam type="float" name="OMSSA_score" value="0"/>
</ProteinHit>
</ProteinIdentification>
</IdentificationRun>
<UnassignedPeptideIdentification identification_run_ref="PI_0" score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="473.579864501953" RT="1722.9376" >
<PeptideHit score="0.00125667609173735" sequence="M(Oxidation)YQPEDDNNSDVTSDDDMTR" charge="5" aa_after="N">
<userParam type="float" name="OMSSA_score" value="0.00834062519686263"/>
<userParam type="string" name="target_decoy" value="target"/>
<userParam type="string" name="protein_references" value="non-unique"/>
</PeptideHit>
</UnassignedPeptideIdentification>
<UnassignedPeptideIdentification identification_run_ref="PI_1" score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="949.4091796875" RT="2639.1951" >
<PeptideHit score="0" sequence="AADPPAENSSAPEAEQGGAE" charge="2" aa_before="K">
<userParam type="float" name="OMSSA_score" value="1.07270560176463e-008"/>
<userParam type="string" name="target_decoy" value="target"/>
<userParam type="string" name="protein_references" value="non-unique"/>
</PeptideHit>
</UnassignedPeptideIdentification>
<UnassignedPeptideIdentification identification_run_ref="PI_2" score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="918.903930664062" RT="3100.6127" >
<PeptideHit score="0.00185332274291766" sequence="DGQVINETSQHHDDLE" charge="2" aa_before="R">
<userParam type="float" name="OMSSA_score" value="0.011764468876267"/>
<userParam type="string" name="target_decoy" value="target"/>
<userParam type="string" name="protein_references" value="unique"/>
</PeptideHit>
</UnassignedPeptideIdentification>
<UnassignedPeptideIdentification identification_run_ref="PI_3" score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="572.333068847656" RT="2716.5246" >
<PeptideHit score="0.00724976613657624" sequence="R(Label:13C(6))VLVQVSYAIGVAEPLSISIFTYGTSQK(Label:2H(4))TER(Label:13C(6))" charge="6" aa_before="R" aa_after="E">
<userParam type="float" name="OMSSA_score" value="0.0948453963407573"/>
<userParam type="string" name="target_decoy" value="target"/>
<userParam type="string" name="protein_references" value="unique"/>
</PeptideHit>
</UnassignedPeptideIdentification>
<mapList count="2">
<map id="0" name="mergedConsensusXMLFile" label="" size="6">
</map>
<map id="1" name="mergedConsensusXMLFile" label="lys4" size="6">
</map>
</mapList>
<consensusElementList>
<consensusElement id="e_7327145959475641104" quality="4" charge="2">
<centroid rt="2950.05168707037" mz="466.231173481377" it="7.94108e+007"/>
<groupedElementList>
<element map="0" id="0" rt="2950.05168707037" mz="466.231173481377" it="7.94108e+007" charge="2"/>
<element map="1" id="0" rt="2949.98007233843" mz="468.243992280111" it="5.7435e+007" charge="2"/>
</groupedElementList>
</consensusElement>
<consensusElement id="e_1636393963998310627" quality="6" charge="2">
<centroid rt="2951.66063481537" mz="480.243121669228" it="3.02089e+008"/>
<groupedElementList>
<element map="0" id="0" rt="2951.66063481537" mz="480.243121669228" it="3.02089e+008" charge="2"/>
<element map="1" id="0" rt="2951.47603138247" mz="483.253183155651" it="2.06348e+008" charge="2"/>
</groupedElementList>
<PeptideIdentification identification_run_ref="PI_0" score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="480.242279052734" RT="2949.0893" >
<PeptideHit score="0" sequence="AADAVEDLR" charge="2" aa_before="R" aa_after="W">
<userParam type="float" name="OMSSA_score" value="7.12408738455504e-005"/>
<userParam type="string" name="target_decoy" value="target"/>
<userParam type="string" name="protein_references" value="non-unique"/>
</PeptideHit>
</PeptideIdentification>
</consensusElement>
<consensusElement id="e_15402369043947988621" quality="10" charge="2">
<centroid rt="2952.22220759792" mz="444.71575417598" it="6.19619e+008"/>
<groupedElementList>
<element map="0" id="0" rt="2952.22220759792" mz="444.71575417598" it="6.19619e+008" charge="2"/>
<element map="1" id="0" rt="2951.29001038575" mz="449.738368328309" it="3.65047e+008" charge="2"/>
</groupedElementList>
</consensusElement>
<consensusElement id="e_11251022421058326475" quality="6" charge="2">
<centroid rt="2954.09369806233" mz="702.341863441635" it="7.88044e+008"/>
<groupedElementList>
<element map="0" id="0" rt="2954.09369806233" mz="702.341863441635" it="7.88044e+008" charge="2"/>
<element map="1" id="0" rt="2953.84905205979" mz="705.351965622825" it="5.59943e+008" charge="2"/>
</groupedElementList>
</consensusElement>
<consensusElement id="e_8431816357466836536" quality="16" charge="2">
<centroid rt="1294.35676502294" mz="522.265476144515" it="366874"/>
<groupedElementList>
<element map="0" id="0" rt="1294.35676502294" mz="522.265476144515" it="366874" charge="2"/>
<element map="1" id="0" rt="1300.58186355398" mz="530.299438449767" it="1.60594e+006" charge="2"/>
</groupedElementList>
</consensusElement>
<consensusElement id="e_16400976481983997956" quality="4" charge="2">
<centroid rt="3264.26689738087" mz="832.910864549183" it="5.25787e+007"/>
<groupedElementList>
<element map="0" id="0" rt="3264.26689738087" mz="832.910864549183" it="5.25787e+007" charge="2"/>
<element map="1" id="0" rt="3263.79050858983" mz="834.923652221355" it="2.64167e+007" charge="2"/>
</groupedElementList>
<PeptideIdentification identification_run_ref="PI_2" score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="832.910949707031" RT="3258.1378" >
<PeptideHit score="0" sequence="PGLVDSNPAPPESQEK" charge="2" aa_before="M" aa_after="K">
<userParam type="float" name="OMSSA_score" value="4.66252566585733e-007"/>
<userParam type="string" name="target_decoy" value="target"/>
<userParam type="string" name="protein_references" value="non-unique"/>
</PeptideHit>
</PeptideIdentification>
</consensusElement>
</consensusElementList>
</consensusXML>
|
