File: IDPosteriorErrorProbability_OMSSA_input.idXML

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<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="http://open-ms.sourceforge.net/XSL/IdXML.xsl" ?>
<IdXML version="1.2" xsi:noNamespaceSchemaLocation="http://open-ms.sourceforge.net/SCHEMAS/IdXML_1_2.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
	<SearchParameters id="SP_0" db="/nfs/wsi/bs/share/usr/bertsch/sequences/18Protein_SoCe_Tr_detergents_trace_target_decoy.fasta" db_version="" taxonomy="0" mass_type="monoisotopic" charges="+1-+3" enzyme="trypsin" missed_cleavages="1" precursor_peak_tolerance="0.01" peak_mass_tolerance="0.5" >
		<FixedModification name="Carbamidomethyl (C)" />
		<VariableModification name="Oxidation (M)" />
	</SearchParameters>
	<IdentificationRun date="2009-10-06T18:12:00" search_engine="OMSSA" search_engine_version="2.1.4" search_parameters_ref="SP_0" >
		<ProteinIdentification score_type="OMSSA" higher_score_better="false" significance_threshold="0" >
			<ProteinHit id="PH_0" accession="10" score="0" sequence="" >
			</ProteinHit>
			<ProteinHit id="PH_1" accession="100" score="0" sequence="" >
			</ProteinHit>
			<ProteinHit id="PH_2" accession="10001" score="0" sequence="" >
			</ProteinHit>
		</ProteinIdentification>
		<PeptideIdentification score_type="OMSSA" higher_score_better="false" significance_threshold="0" MZ="380.6954346" RT="778.61" >
			<PeptideHit score="0.79432823472" sequence="AEDAKAR" charge="2" aa_before="R" aa_after="V" protein_refs="PH_1" >
			</PeptideHit>
			<PeptideHit score="0.34673685045" sequence="TVDGVNR" charge="2" aa_before="R" aa_after="E" protein_refs="PH_0" >
			</PeptideHit>
			<PeptideHit score="0.30199517204" sequence="TVDGPSGK" charge="2" aa_before="K" aa_after="L" protein_refs="PH_1" >
			</PeptideHit>
			<PeptideHit score="0.13182567386" sequence="AEQAVSR" charge="2" aa_before="R" aa_after="L" protein_refs="PH_2" >
			</PeptideHit>
			<PeptideHit score="0.0457088189615" sequence="EAAAVGSR" charge="2" aa_before="R" aa_after="V" protein_refs="PH_0" >
			</PeptideHit>
			<PeptideHit score="0.0389045144994" sequence="EAEGRAK" charge="2" aa_before="R" aa_after="E" protein_refs="PH_1" >
			</PeptideHit>
			<PeptideHit score="0.00851138038202" sequence="EAEGARK" charge="2" aa_before="K" aa_after="A" protein_refs="PH_1" >
			</PeptideHit>
			<PeptideHit score="0.00831763771103" sequence="LSNEAAR" charge="2" aa_before="R" aa_after="R" protein_refs="PH_1" >
			</PeptideHit>
			<PeptideHit score="0.00691830970919" sequence="AEASVAGR" charge="2" aa_before="R" aa_after="A" protein_refs="PH_1" >
			</PeptideHit>
			<PeptideHit score="0.0063095734448" sequence="GDRADAR" charge="2" aa_before="R" aa_after="S" protein_refs="PH_1" >
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="OMSSA" higher_score_better="false" significance_threshold="0" MZ="309.2268982" RT="958.267" >
			<PeptideHit score="0.00144543977075" sequence="LLKLIVAR" charge="3" aa_before="R" aa_after="G" protein_refs="PH_0" >
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="OMSSA" higher_score_better="false" significance_threshold="0" MZ="375.6966248" RT="998.481" >
			<PeptideHit score="0.000223872113857" sequence="VANYQR" charge="2" aa_before="R" aa_after="D" protein_refs="PH_1" >
			</PeptideHit>
			<PeptideHit score="7.58577575029e-05" sequence="RQYQR" charge="2" aa_before="R" aa_after="A" protein_refs="PH_2" >
			</PeptideHit>
			<PeptideHit score="3.0199517204e-5" sequence="QGVYQR" charge="2" aa_before="K" aa_after="V" protein_refs="PH_2" >
			</PeptideHit>
			<PeptideHit score="2.08929613085e-5" sequence="VYEPSR" charge="2" aa_before="R" aa_after="F" protein_refs="PH_2" >
			</PeptideHit>
			<PeptideHit score="1e-5" sequence="MQATTAK" charge="2" aa_after="R" protein_refs="PH_2" >
			</PeptideHit>
			<PeptideHit score="4.78630092323e-6" sequence="DFEAIR" charge="2" aa_before="R" aa_after="A" protein_refs="PH_1" >
			</PeptideHit>
			<PeptideHit score="2.08929613085e-6" sequence="FDELAR" charge="2" aa_before="R" aa_after="A" protein_refs="PH_2" >
			</PeptideHit>
			<PeptideHit score="1.17489755494e-6" sequence="VEEFAR" charge="2" aa_before="R" aa_after="A" protein_refs="PH_1" >
			</PeptideHit>
			<PeptideHit score="2.39883291902e-07" sequence="VEFFAR" charge="2" aa_before="R" aa_after="A" protein_refs="PH_1" >
			</PeptideHit>
		</PeptideIdentification>
	</IdentificationRun>
</IdXML>