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<?xml version="1.0" encoding="ISO-8859-1"?>
<PARAMETERS version="1.3" xsi:noNamespaceSchemaLocation="http://open-ms.sourceforge.net/schemas/Param_1_3.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<NODE name="InspectAdapter" description="">
<NODE name="1" description="">
<ITEM name="blind" value="false" type="string" description="" />
<ITEM name="blind_only" value="false" type="string" description="" />
<ITEM name="cleavage" value="Trypsin" type="string" description="" />
<ITEM name="contact_info" value="unknown" type="string" description="" />
<ITEM name="contact_institution" value="unknown" type="string" description="" />
<ITEM name="contact_name" value="unknown" type="string" description="" />
<ITEM name="dbs" value="" type="string" description="" />
<ITEM name="debug" value="0" type="int" description="" />
<ITEM name="in" value="Inspect.mzXML" type="string" description="" />
<ITEM name="inspect_directory" value="inspect_TEST_directory" type="string" description="" />
<ITEM name="inspect_in" value="false" type="string" description="" />
<ITEM name="inspect_input" value="" type="string" description="" />
<ITEM name="inspect_out" value="false" type="string" description="" />
<ITEM name="inspect_output" value="" type="string" description="" />
<ITEM name="instrument" value="QTOF" type="string" description="" />
<ITEM name="log" value="TOPP.log" type="string" description="" />
<ITEM name="max_modifications_pp" value="5" type="int" description="" />
<ITEM name="max_ptm_size" value="250" type="float" description="" />
<ITEM name="min_spp" value="-1" type="int" description="" />
<ITEM name="modifications" value="10.3+,KRLNH,fix:+16,C:16-,cterm:-16,nterm" type="string" description="" />
<ITEM name="modifications_xml_file" value="Inspect_PTMs.xml" type="string" description="" />
<ITEM name="multicharge" value="true" type="string" description="" />
<ITEM name="new_db" value="" type="string" description="" />
<ITEM name="no_tmp_dbs" value="false" type="string" description="" />
<ITEM name="out" value="InspectAdapter_1_output.tmp" type="string" description="" />
<ITEM name="p_value" value="0.975" type="float" description="" />
<ITEM name="p_value_blind" value="1" type="float" description="" />
<ITEM name="peak_mass_tolerance" value="0.5" type="float" description="" />
<ITEM name="precursor_mass_tolerance" value="1" type="float" description="" />
<ITEM name="snd_db" value="" type="string" description="" />
<ITEM name="list_modifications" value="false" type="string" description="" />
<ITEM name="tag_count" value="3" type="int" description="" />
<ITEM name="temp_data_directory" value="." type="string" description="" />
<ITEM name="trie_dbs" value="" type="string" description="" />
<ITEM name="use_monoisotopic_mod_mass" value="false" type="string" description="" />
</NODE>
</NODE>
</PARAMETERS>
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