1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
|
<?xml version="1.0" encoding="UTF-8"?>
<IdXML version="1.2" xsi:noNamespaceSchemaLocation="http://open-ms.sourceforge.net/SCHEMAS/IdXML_1_2.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<SearchParameters charges="+1, +2" id="SP_1" db_version="1.0" mass_type="average" peak_mass_tolerance="0.3" precursor_peak_tolerance="1.0" db="MSDB" enzyme="trypsin" />
<SearchParameters charges="+1, +2, +3" id="SP_2" db_version="1.1" mass_type="monoisotopic" peak_mass_tolerance="0.3" precursor_peak_tolerance="1.0" db="MSDB">
<FixedModification name="Fixed" />
<FixedModification name="Fixed2" />
<VariableModification name="Variable" />
<VariableModification name="Variable2" />
</SearchParameters>
<IdentificationRun date="2006-01-12T12:13:14" search_engine="Mascot" search_parameters_ref="SP_1" search_engine_version="2.1.0">
<ProteinIdentification score_type="MOWSE" higher_score_better="true">
<ProteinHit score="34.4" id="PH_3" accession="PROT1" sequence="ABCDEFG" >
<UserParam type="string" value="ProteinHit" name="name"/>
</ProteinHit>
<ProteinHit score="24.4" id="PH_4" accession="PROT2" sequence="ABCDEFG" />
<UserParam type="string" value="ProteinIdentification" name="name"/>
</ProteinIdentification>
<PeptideIdentification score_type="MOWSE" higher_score_better="false" MZ="675.9" RT="1234.5" spectrum_reference="17">
<PeptideHit score="0" sequence="TC(MOD:01329)VADESHAGC(MOD:01329)EK" charge="2" aa_before="K" aa_after="S" protein_refs="PH_3 PH_4" >
<UserParam type="float" name="predicted_RT" value="359.97071"/>
<UserParam type="float" name="predicted_RT_p_value" value="0.10750521"/>
<UserParam type="float" name="Mascot_score" value="56.779999"/>
<UserParam type="float" name="predicted_RT_p_value_first_dim" value="0.74765141"/>
<UserParam type="float" name="predicted_RT_first_dim" value="0.51502823"/>
</PeptideHit>
<PeptideHit score="0" sequence="KC(MOD:01329)PSPC(MOD:01329)QLQAER" charge="2" aa_before="K" aa_after="A" protein_refs="PH_3" >
<UserParam type="float" name="predicted_RT" value="892.75323"/>
<UserParam type="float" name="predicted_RT_p_value" value="0.11121846"/>
<UserParam type="float" name="Mascot_score" value="66.480003"/>
<UserParam type="float" name="predicted_RT_p_value_first_dim" value="0.18287376"/>
<UserParam type="float" name="predicted_RT_first_dim" value="4.7040273"/>
</PeptideHit>
<UserParam type="float" name="first_dim_rt" value="4"/>
</PeptideIdentification>
<PeptideIdentification score_type="MOWSE" higher_score_better="true">
<PeptideHit score="0" sequence="KC(MOD:01329)PSPC(MOD:01329)QLQAER" charge="2" aa_before="K" aa_after="A" protein_refs="PH_4" >
<UserParam type="float" name="predicted_RT" value="892.75323"/>
<UserParam type="float" name="predicted_RT_p_value" value="0.07424355"/>
<UserParam type="float" name="Mascot_score" value="50.52"/>
<UserParam type="float" name="predicted_RT_p_value_first_dim" value="0.18287376"/>
<UserParam type="float" name="predicted_RT_first_dim" value="4.7040273"/>
</PeptideHit>
<PeptideHit score="0.001507159" sequence="KC(MOD:01329)PSPC(MOD:01329)QLQAER" charge="2" aa_before="K" aa_after="A" protein_refs="PH_4" >
<UserParam type="float" name="predicted_RT" value="892.75323"/>
<UserParam type="float" name="predicted_RT_p_value" value="0.068307009"/>
<UserParam type="float" name="Mascot_score" value="44.470001"/>
<UserParam type="float" name="predicted_RT_p_value_first_dim" value="0.18287376"/>
<UserParam type="float" name="predicted_RT_first_dim" value="4.7040273"/>
</PeptideHit>
<UserParam type="float" name="first_dim_rt" value="6"/>
</PeptideIdentification>
</IdentificationRun>
<IdentificationRun date="2007-01-12T12:13:14" search_engine="Mascot" search_parameters_ref="SP_2" search_engine_version="2.1.1">
<ProteinIdentification score_type="MOWSE" higher_score_better="true">
<ProteinHit score="100.0" id="PH_5" accession="PROT3" />
</ProteinIdentification>
<PeptideIdentification score_type="MOWSE" higher_score_better="true">
<PeptideHit score="0" sequence="EYEATLEEC(MOD:01329)C(MOD:01329)AK" charge="2" aa_before="K" aa_after="D" protein_refs="PH_3" >
<UserParam type="float" name="predicted_RT" value="900.57296"/>
<UserParam type="float" name="predicted_RT_p_value" value="0.32534273"/>
<UserParam type="float" name="Mascot_score" value="51.860001"/>
<UserParam type="float" name="predicted_RT_p_value_first_dim" value="0.016918045"/>
<UserParam type="float" name="predicted_RT_first_dim" value="3.9354399"/>
</PeptideHit>
<UserParam type="float" name="first_dim_rt" value="6"/>
</PeptideIdentification>
</IdentificationRun>
</IdXML>
|
