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<?xml version="1.0" encoding="ISO-8859-1"?>
<PARAMETERS version="1.3" xsi:noNamespaceSchemaLocation="http://open-ms.sourceforge.net/schemas/Param_1_3.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<NODE name="TextExporter" description="">
<NODE name="1" description="Instance '1' section for 'TextExporter'">
<ITEM name="in" value="" type="string" description="Input file (valid formats: 'featureXML,consensusXML,idXML')" tags="input file" />
<ITEM name="out" value="TextExporter_7_consensus_tsv.tmp" type="string" description="Output file. Mandatory for FeatureXML and IdXML." tags="output file" />
<ITEM name="separator" value="" type="string" description="The used separator characters. If unset the 'tab' character is used." />
<ITEM name="no_ids" value="false" type="string" description="Suppresses output of identification data." restrictions="true,false" />
<ITEM name="proteins_only" value="false" type="string" description="Set this flag if you want only protein information from an idXML file" restrictions="true,false" />
<ITEM name="peptides_only" value="false" type="string" description="Set this flag if you want only peptide information from an idXML file" restrictions="true,false" />
<ITEM name="first_dim_rt" value="false" type="string" description="If this flag is set the first_dim RT of the peptide hits will also be printed (if present)." restrictions="true,false" />
<ITEM name="consensus_centroids" value="" type="string" description="Centroids of consensus features" tags="output file" />
<ITEM name="consensus_elements" value="" type="string" description="Elements of consensus features" tags="output file" />
<ITEM name="consensus_features" value="" type="string" description="Consensus features and contained elements from all maps (writes 'nan's if element is missing)" tags="output file" />
<ITEM name="sorting_method" value="RT_then_MZ" type="string" description="Sorting method" restrictions="none,RT,MZ,RT_then_MZ,intensity,quality_decreasing,quality_increasing" />
<ITEM name="sort_by_maps" value="true" type="string" description="Apply a stable sort by the covered maps, lexicographically" restrictions="true,false" />
<ITEM name="sort_by_size" value="true" type="string" description="Apply a stable sort by decreasing size (i.e., the number of elements)" restrictions="true,false" />
<ITEM name="log" value="TOPP.log" type="string" description="Location of the log file" tags="advanced" />
<ITEM name="debug" value="0" type="int" description="Sets the debug level" tags="advanced" />
<ITEM name="no_progress" value="true" type="string" description="Disables progress logging to command line" restrictions="true,false" />
</NODE>
</NODE>
</PARAMETERS>
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