File: aligned.sam

package info (click to toggle)
pbbam 2.4.0%2Bdfsg-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 14,148 kB
  • sloc: cpp: 60,214; xml: 2,908; ansic: 660; sh: 275; python: 203; makefile: 187
file content (8 lines) | stat: -rw-r--r-- 1,634 bytes parent folder | download | duplicates (7)
1
2
3
4
5
6
7
8
@HD	VN:1.3.1	SO:coordinate	pb:3.0.3
@SQ	SN:lambda_NEB3011	LN:48502	M5:a1319ff90e994c8190a4fe6569d0822a
@RG	ID:0d7b28fa	PL:PACBIO	DS:READTYPE=SUBREAD;BINDINGKIT=100-619-300;SEQUENCINGKIT=100-619-400;BASECALLERVERSION=3.0;FRAMERATEHZ=100	PU:singleInsertion	PM:SEQUEL
@PG	ID:bwa	PN:bwa	VN:0.7.10-r1017-dirty	CL:bwa mem lambdaNEB.fa singleInsertion.fasta
singleInsertion/100/0_49	2048	lambda_NEB3011	5211	60	3H8=1D19=1I21=59H	*	0	0	GGCTGCAGGTACAGCGGTCAGGAGGCCAATTGATGCCGGACTGGCTGAT	*	NM:i:2	MD:Z:8^T40	AS:i:34	XS:i:0	RG:Z:0d7b28fa	SA:Z:lambda_NEB3011,9378,+,52S37=2D10=1I11=,60,3;	qe:i:49	qs:i:0	np:i:1	zm:i:100	rq:f:0.6	sn:B:f,0.2,0.2,0.2,0.2
singleInsertion/200/0_49	2048	lambda_NEB3011	5211	60	3H8=1D19=1I21=59H	*	0	0	GGCTGCAGGTACAGCGGTCAGGAGGCCAATTGATGCCGGACTGGCTGAT	*	NM:i:2	MD:Z:8^T40	AS:i:34	XS:i:0	RG:Z:0d7b28fa	SA:Z:lambda_NEB3011,9378,-,37=2D10=1I11=52S,60,3;	qe:i:49	qs:i:0	np:i:1	zm:i:200	rq:f:0.6	sn:B:f,0.2,0.2,0.2,0.2
singleInsertion/100/0_111	0	lambda_NEB3011	9378	60	52S37=2D10=1I11=	*	0	0	TTTGGCTGCAGGTACAGCGGTCAGGAGGCCAATTGATGCCGGACTGGCTGATAAGTCACCAATGTGGGACGTCCGTCGATGGCAGAAGAGCAGCACGGTAAACAGCGGCAA	*	NM:i:3	MD:Z:37^TC21	AS:i:43	XS:i:0	RG:Z:0d7b28fa	SA:Z:lambda_NEB3011,5211,+,3S8=1D19=1I21=59S,60,2;	qe:i:111	qs:i:0	np:i:1	zm:i:100	rq:f:0.6	sn:B:f,0.2,0.2,0.2,0.2
singleInsertion/100/0_111	16	lambda_NEB3011	9378	60	37=2D10=1I11=52S	*	0	0	AAGTCACCAATGTGGGACGTCCGTCGATGGCAGAAGAGCAGCACGGTAAACAGCGGCAAATCAGCCAGTCCGGCATCAATTGGCCTCCTGACCGCTGTACCTGCAGCCAAA	*	NM:i:3	MD:Z:37^TC21	AS:i:43	XS:i:0	RG:Z:0d7b28fa	SA:Z:lambda_NEB3011,5211,+,3S8=1D19=1I21=59S,60,2;	qe:i:111	qs:i:0	np:i:1	zm:i:100	rq:f:0.6	sn:B:f,0.2,0.2,0.2,0.2