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Description: fix failure to execute GWAS_manhattanplots.R
Without this patch, autopkgtest fails with the following error, due to
a flaw in the logic of the script when integrated in an FHS compliant
operating system tree:
.
GWAS_manhattanplots -b 0.1 -q -y 12 -i plot_files.txt
Error in file(filename, "r", encoding = encoding) :
cannot open the connection
Calls: source -> file
In addition: Warning message:
In file(filename, "r", encoding = encoding) :
cannot open file '/usr/bin/GWAS_manhattanplots.R': No such file or directory
Execution halted
Author: Étienne Mollier <emollier@debian.org>
Forwarded: not-needed
Last-Update: 2025-05-01
---
This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
--- pique.orig/bin/GWAS_manhattanplots
+++ pique/bin/GWAS_manhattanplots
@@ -60,7 +60,7 @@
basename <- dirname(script)
# source library
-lib.name <- paste(sep = "/", basename, "GWAS_manhattanplots.R")
+lib.name <- "/usr/lib/R/site-library/pique/GWAS_manhattanplots.R"
source(lib.name)
# Required for Benjamini-Hochberg correction
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