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# ======================================================================
# (c) Copyright 1996,1997,1998,1999,2000,2001,2004,2006,2007,2008,2009,
# 2010,2011
# Whitehead Institute for Biomedical Research, Steve Rozen,
# Andreas Untergasser and Helen Skaletsky
# All rights reserved.
#
# This file is part of primer3, the libprimer3 library, the oligotm
# library and the dpal library.
#
# Primer3 and the libraries above are free software; you can
# redistribute them and/or modify them under the terms of the GNU
# General Public License as published by the Free Software Foundation;
# either version 2 of the License, or (at your option) any later
# version.
#
# This software is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this file (file gpl-2.0.txt in the source distribution); if
# not, write to the Free Software Foundation, Inc., 51 Franklin St,
# Fifth Floor, Boston, MA 02110-1301 USA
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
# OWNERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
# ======================================================================
WINMAKE=mingw32-make
# See ../src/Makefile for detailed instructions on how to use TESTOPTS
# The only valid non-empty values for TESTOPTS are --valgrind and --windows
TESTOPTS =
test: makeexes testcmdline testtm testdpal testthal testmasker testamp testcore
echo; echo; echo "Testing completed. You must check the test output for the string FAILED"; echo; echo;
valgrnda: makeexes testcmdline testtm testdpal testthal testmasker testampa testcorea
echo; echo; echo "Testing completed. You must check the test output for the string FAILED"; echo; echo;
valgrndb: testcoreb
echo; echo; echo "Testing completed. You must check the test output for the string FAILED"; echo; echo;
testcmdline:
ifeq ($(TESTOPTS),--windows)
perl cmdline_test.pl $(TESTOPTS)
else
perl cmdline_test.pl $(TESTOPTS)
endif
testcore:
ifeq ($(TESTOPTS),--windows)
echo 'TESTING primer3_core' & perl p3test.pl $(TESTOPTS)
else
echo; echo; echo 'TESTING primer3_core'; echo; perl p3test.pl $(TESTOPTS)
endif
testamp:
ifeq ($(TESTOPTS),--windows)
echo 'TESTING amplicon3_core' & perl a3test.pl $(TESTOPTS)
else
echo; echo; echo 'TESTING amplicon3_core'; echo; perl a3test.pl $(TESTOPTS)
endif
testampa:
echo; echo; echo 'TESTING primer3_core'; echo; perl a3test.pl --valgrinda
testcorea:
echo; echo; echo 'TESTING primer3_core'; echo; perl p3test.pl --valgrinda
testcoreb:
echo; echo; echo 'TESTING primer3_core'; echo; perl p3test.pl --valgrindb
testdpal:
ifeq ($(TESTOPTS),--windows)
echo 'TESTING ALIGNMENT CALCS' & perl dpal_test.pl $(TESTOPTS)
else
echo; echo; echo 'TESTING ALIGNMENT CALCS'; echo; perl dpal_test.pl $(TESTOPTS);
endif
testthal:
ifeq ($(TESTOPTS),--windows)
echo 'TESTING THERMODYNAMIC ALIGNMENT CALCS' & perl thal_test.pl $(TESTOPTS)
else
echo; echo; echo 'TESTING THERMODYNAMIC ALIGNMENT CALCS'; echo; perl thal_test.pl $(TESTOPTS);
endif
testmasker:
ifeq ($(TESTOPTS),--windows)
echo 'TESTING MASKER' & perl masker_test.pl $(TESTOPTS)
else
echo; echo; echo 'TESTING MASKER'; echo; perl masker_test.pl $(TESTOPTS);
endif
testtm:
ifeq ($(TESTOPTS),--windows)
perl oligotm_test.pl $(TESTOPTS)
else
perl oligotm_test.pl $(TESTOPTS)
endif
makeexes:
ifeq ($(TESTOPTS),--windows)
cd ../src & $(WINMAKE)
else
cd ../src; make
endif
clean:
ifeq ($(TESTOPTS),--windows)
echo 'CLEAN UP TEST DIRECTORIES'
del /Q /F primer1_list_tmp/*
del /Q /F primer1_th_list_tmp/*
del /Q /F primer_list_tmp/*
del /Q /F th-w-other-tasks_list_tmp/*
del /Q /F primer_global_err/*.tmp primer_global_err/*.tmp2 primer_global_err/*.bak
del /Q /F amplicon3/*.tm pamplicon3/*.jpg amplicon3/decipher*
del /Q /F *.tmp *.bak *.tmp.err *~
del /Q /F hyb_probe_only.for hyb_probe_only.int
del /Q /F right_only.for right_only.rev left_only.for
del /Q /F pcr_primers_and_io.int pcr_primers_and_io.rev pcr_primers_and_io.for
del /Q /F pcr_primers.rev pcr_primers.for
del /Q /F pick_primer_list_and_file_flag_th_*.for pick_primer_list_and_file_flag_th_*.rev
del /Q /F pick_primer_list_and_file_flag_th_*.int
del /Q /F syntax*.for syntax*.int syntax*.rev
else
echo; echo; echo 'CLEAN UP TEST DIRECTORIES'; echo; echo;
-rm -rf primer_list_tmp/*
-rm -rf primer1_list_tmp/*
-rm -rf primer1_th_list_tmp/*
-rm -rf th-w-other-tasks_list_tmp/*
-rm -f primer_global_err/*.tmp primer_global_err/*.tmp2 primer_global_err/*.bak
-rm -f amplicon3/*.tmp amplicon3/*.jpg amplicon3/decipher*
-rm -f *.tmp *.bak *.tmp.err *~
-rm -f hyb_probe_only.for hyb_probe_only.int
-rm -f right_only.for right_only.rev left_only.for
-rm -f pcr_primers_and_io.int pcr_primers_and_io.rev pcr_primers_and_io.for
-rm -f pcr_primers.rev pcr_primers.for
-rm -f pick_primer_list_and_file_flag_th_[1-4].for pick_primer_list_and_file_flag_th_[1-4].rev
-rm -f pick_primer_list_and_file_flag_th_[1-4].int
-rm -f syntax[0-1][0-9].for syntax[0-1][0-9].int syntax[0-1][0-9].rev
-rm -f oligotm.*.valg # valgrind output from oligotm_test.pl --valgrind
-rm -f ntdpal.*.valg # valgrind output from dpal_test.pl --valgrind
-rm -f ntthal.*.valg # valgrind output from thal_test.pl --valgrind
-rm -f masker.*.valg # valgrind output from thal_test.pl --valgrind
-rm -f oligotm.*.valg.* # valgrind output from oligotm_test.pl --valgrind
-rm -f ntdpal.*.valg.* # valgrind output from dpal_test.pl --valgrind
-rm -f ntthal.*.valg.* # valgrind output from thal_test.pl --valgrind
-rm -f masker.*.valg.* # valgrind output from masker_test.pl --valgrind
-rm -f *.vg */*.vg # valgrind output from p3test{,z}.pl --valgrind
-rm -f *.vg.core.* # core files from crashed valgrind test
-rm -f ./core # in case we crashed and left a core file
endif
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