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.. (parent) |
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d |
rwxr-xr-x |
8,192 |
amplicon3
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d |
rwxr-xr-x |
4,096 |
primer1_list_last
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d |
rwxr-xr-x |
4,096 |
primer1_th_list_last
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d |
rwxr-xr-x |
4,096 |
primer3_config
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d |
rwxr-xr-x |
12,288 |
primer_global_err
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d |
rwxr-xr-x |
4,096 |
primer_list_last
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d |
rwxr-xr-x |
4,096 |
th-w-other-tasks_list_last
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 |
- |
rw-r--r-- |
6,700 |
Makefile
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- |
rwxr-xr-x |
9,300 |
a3_diff_decipher.pl
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- |
rwxr-xr-x |
2,342 |
a3_draw_pics.r
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- |
rwxr-xr-x |
2,801 |
a3_run_decipher.r
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- |
rwxr-xr-x |
13,781 |
a3test.pl
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- |
rw-r--r-- |
2,160 |
cmd_test3_output
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- |
rw-r--r-- |
33 |
cmd_test4_output
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- |
rw-r--r-- |
2,160 |
cmd_test5_output
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- |
rw-r--r-- |
12,227 |
cmdline_test.pl
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- |
rw-r--r-- |
13,680 |
dpal_input
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- |
rw-r--r-- |
24,407 |
dpal_long_input
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- |
rw-r--r-- |
65 |
dpal_long_score_output
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- |
rw-r--r-- |
28,091 |
dpal_output
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- |
rw-r--r-- |
1,754 |
dpal_score_output
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- |
rw-r--r-- |
11,477 |
dpal_test.pl
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- |
rw-r--r-- |
425 |
dv_conc_vs_dntp_conc_input
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- |
rw-r--r-- |
1,264 |
dv_conc_vs_dntp_conc_output
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- |
rw-r--r-- |
119,850 |
long_seq_input
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- |
rw-r--r-- |
126,687 |
long_seq_output
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- |
rw-r--r-- |
426 |
long_seq_tm_test.pl
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- |
rw-r--r-- |
3,375 |
masker.fna
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- |
rw-r--r-- |
1,174 |
masker_input
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- |
rw-r--r-- |
65,145 |
masker_output
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- |
rwxr-xr-x |
8,885 |
masker_test.pl
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- |
rw-r--r-- |
7,245 |
not_for_production.lib
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- |
rw-r--r-- |
7,302 |
not_for_production_Ns.lib
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- |
rw-r--r-- |
7,302 |
not_for_production_Xs.lib
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- |
rw-r--r-- |
2,326 |
oligotm.txt
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- |
rw-r--r-- |
4,244 |
oligotm_test.pl
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- |
rw-r--r-- |
13,712 |
p3-tmpl-mispriming_input
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- |
rw-r--r-- |
28,357 |
p3-tmpl-mispriming_output
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- |
rw-r--r-- |
7,174 |
p3_3_prime_0_input
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- |
rw-r--r-- |
123,413 |
p3_3_prime_0_output
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- |
rw-r--r-- |
6,316 |
p3_3_prime_n_input
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- |
rw-r--r-- |
116,334 |
p3_3_prime_n_output
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- |
rwxr-xr-x |
25,956 |
p3test.pl
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- |
rw-r--r-- |
5,484 |
primer1_input
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- |
rw-r--r-- |
39,272 |
primer1_output
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- |
rw-r--r-- |
5,742 |
primer1_th_input
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- |
rw-r--r-- |
42,911 |
primer1_th_output
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- |
rw-r--r-- |
7,207 |
primer3_io_translator.pl
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- |
rw-r--r-- |
1,574 |
primer3_v1_1_4_default_settings_input
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- |
rw-r--r-- |
8,684 |
primer3_v1_1_4_default_settings_output
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- |
rw-r--r-- |
1,574 |
primer3web_v0_4_0_default_settings_input
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- |
rw-r--r-- |
9,362 |
primer3web_v0_4_0_default_settings_output
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- |
rw-r--r-- |
1,627 |
primer3web_v3_0_0_default_settings_input
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- |
rw-r--r-- |
10,369 |
primer3web_v3_0_0_default_settings_output
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- |
rw-r--r-- |
1,574 |
primer3web_v4_0_0_default_settings_input
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- |
rw-r--r-- |
10,300 |
primer3web_v4_0_0_default_settings_output
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- |
rw-r--r-- |
1,716 |
primer_all_settingsfiles_input
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- |
rw-r--r-- |
5,047 |
primer_all_settingsfiles_output
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- |
rw-r--r-- |
14,722 |
primer_annealing_temp_input
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- |
rw-r--r-- |
49,675 |
primer_annealing_temp_output
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- |
rw-r--r-- |
113,398 |
primer_boundary1_formatted_output
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- |
rw-r--r-- |
41,195 |
primer_boundary1_input
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- |
rw-r--r-- |
110,366 |
primer_boundary1_output
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- |
rw-r--r-- |
129,970 |
primer_boundary_formatted_output
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- |
rw-r--r-- |
45,209 |
primer_boundary_input
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- |
rw-r--r-- |
126,341 |
primer_boundary_output
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- |
rw-r--r-- |
4,193 |
primer_check_input
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- |
rw-r--r-- |
18,014 |
primer_check_output
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- |
rw-r--r-- |
15,637 |
primer_dmso_formamide_input
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- |
rw-r--r-- |
23,585 |
primer_dmso_formamide_output
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- |
rw-r--r-- |
1,067 |
primer_end_pathology_input
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- |
rw-r--r-- |
4,666 |
primer_end_pathology_output
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- |
rw-r--r-- |
5,053 |
primer_first_base_index_input
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- |
rw-r--r-- |
8,811 |
primer_first_base_index_output
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- |
rw-r--r-- |
12,328 |
primer_gc_end_input
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- |
rw-r--r-- |
35,680 |
primer_gc_end_output
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- |
rw-r--r-- |
205 |
primer_high_gc_load_set.set
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- |
rw-r--r-- |
1,716 |
primer_high_gc_load_set_input
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- |
rw-r--r-- |
5,312 |
primer_high_gc_load_set_output
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- |
rw-r--r-- |
141 |
primer_high_tm_load_set.set
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- |
rw-r--r-- |
1,716 |
primer_high_tm_load_set_input
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- |
rw-r--r-- |
5,242 |
primer_high_tm_load_set_output
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- |
rw-r--r-- |
168,898 |
primer_human_input
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- |
rw-r--r-- |
1,528,913 |
primer_human_output
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- |
rw-r--r-- |
13,558 |
primer_input
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- |
rw-r--r-- |
47,461 |
primer_internal1_formatted_output
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- |
rw-r--r-- |
10,400 |
primer_internal1_input
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- |
rw-r--r-- |
52,482 |
primer_internal1_output
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- |
rw-r--r-- |
48,098 |
primer_internal_formatted_output
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- |
rw-r--r-- |
10,416 |
primer_internal_input
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- |
rw-r--r-- |
54,280 |
primer_internal_output
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- |
rw-r--r-- |
10,188 |
primer_internal_position_input
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- |
rw-r--r-- |
39,445 |
primer_internal_position_output
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- |
rw-r--r-- |
7,325 |
primer_lib_amb_codes_input
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- |
rw-r--r-- |
19,306 |
primer_lib_amb_codes_output
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- |
rw-r--r-- |
224,674 |
primer_masker_formatted_output
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- |
rw-r--r-- |
95,632 |
primer_masker_input
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- |
rw-r--r-- |
121,035 |
primer_masker_output
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- |
rw-r--r-- |
4,820 |
primer_mispriming_boundary1_formatted_output
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- |
rw-r--r-- |
1,479 |
primer_mispriming_boundary1_input
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- |
rw-r--r-- |
4,802 |
primer_mispriming_boundary1_output
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- |
rw-r--r-- |
2,946 |
primer_mispriming_boundary2_formatted_output
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- |
rw-r--r-- |
1,258 |
primer_mispriming_boundary2_input
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- |
rw-r--r-- |
3,130 |
primer_mispriming_boundary2_output
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- |
rw-r--r-- |
19,398 |
primer_mispriming_formatted_output
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- |
rw-r--r-- |
3,563 |
primer_mispriming_input
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|
- |
rw-r--r-- |
742 |
primer_mispriming_long_lib_input
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- |
rw-r--r-- |
2,104 |
primer_mispriming_long_lib_output
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|
- |
rw-r--r-- |
37,040 |
primer_mispriming_output
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- |
rw-r--r-- |
3,733 |
primer_mispriming_th_input
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|
- |
rw-r--r-- |
41,112 |
primer_mispriming_th_output
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- |
rw-r--r-- |
7,054 |
primer_must_match_input
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- |
rw-r--r-- |
107,774 |
primer_must_match_output
|
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- |
rw-r--r-- |
16,802 |
primer_must_overlap_point_input
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- |
rw-r--r-- |
31,710 |
primer_must_overlap_point_output
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- |
rw-r--r-- |
17,927 |
primer_must_use_formatted_output
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- |
rw-r--r-- |
7,588 |
primer_must_use_input
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- |
rw-r--r-- |
7,037 |
primer_must_use_op_input
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- |
rw-r--r-- |
21,205 |
primer_must_use_output
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- |
rw-r--r-- |
7,758 |
primer_must_use_th_input
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- |
rw-r--r-- |
23,419 |
primer_must_use_th_output
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- |
rw-r--r-- |
96,178 |
primer_new_tasks_formatted_output
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- |
rw-r--r-- |
38,205 |
primer_new_tasks_input
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- |
rw-r--r-- |
89,124 |
primer_new_tasks_output
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- |
rw-r--r-- |
32,303 |
primer_new_tasks_th_input
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- |
rw-r--r-- |
84,659 |
primer_new_tasks_th_output
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- |
rw-r--r-- |
7,602 |
primer_num_best_input
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- |
rw-r--r-- |
133,057 |
primer_num_best_output
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- |
rw-r--r-- |
8,588 |
primer_obj_fn_input
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- |
rw-r--r-- |
77,305 |
primer_obj_fn_output
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- |
rw-r--r-- |
32,877 |
primer_ok_regions2_input
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- |
rw-r--r-- |
789,471 |
primer_ok_regions2_output
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- |
rw-r--r-- |
12,113 |
primer_ok_regions_formatted_output
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- |
rw-r--r-- |
3,701 |
primer_ok_regions_input
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- |
rw-r--r-- |
9,993 |
primer_ok_regions_output
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- |
rw-r--r-- |
56,264 |
primer_output
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- |
rw-r--r-- |
9,031 |
primer_overhang_input
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- |
rw-r--r-- |
36,399 |
primer_overhang_output
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- |
rw-r--r-- |
8,997 |
primer_overhang_th_input
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- |
rw-r--r-- |
39,985 |
primer_overhang_th_output
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- |
rw-r--r-- |
3,785 |
primer_overlap_junction_input
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|
- |
rw-r--r-- |
9,469 |
primer_overlap_junction_output
|
|
- |
rw-r--r-- |
1,750 |
primer_poly_x_input
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|
- |
rw-r--r-- |
4,579 |
primer_poly_x_output
|
|
- |
rw-r--r-- |
203,314 |
primer_position_penalty_formatted_output
|
|
- |
rw-r--r-- |
52,293 |
primer_position_penalty_input
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- |
rw-r--r-- |
168,508 |
primer_position_penalty_output
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- |
rw-r--r-- |
9,988 |
primer_quality_boundary_input
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- |
rw-r--r-- |
17,642 |
primer_quality_boundary_output
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- |
rw-r--r-- |
142,129 |
primer_rat_input
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- |
rw-r--r-- |
587,132 |
primer_rat_output
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- |
rw-r--r-- |
2,658 |
primer_renewed_tasks_input
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- |
rw-r--r-- |
15,157 |
primer_renewed_tasks_output
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- |
rw-r--r-- |
301 |
primer_repeat_boundary1_lib
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- |
rw-r--r-- |
311 |
primer_repeat_boundary2_lib
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- |
rw-r--r-- |
159,490 |
primer_repeat_long_lib
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- |
rw-r--r-- |
7,093 |
primer_sec_struct_dpal_input
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- |
rw-r--r-- |
198,087 |
primer_sec_struct_dpal_output
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- |
rw-r--r-- |
8,698 |
primer_sec_struct_thal_input
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- |
rw-r--r-- |
274,747 |
primer_sec_struct_thal_output
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- |
rw-r--r-- |
36,880 |
primer_start_codon_input
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- |
rw-r--r-- |
277,953 |
primer_start_codon_output
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- |
rw-r--r-- |
4,582 |
primer_syntax_input
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- |
rw-r--r-- |
7,294 |
primer_syntax_output
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- |
rw-r--r-- |
12,300 |
primer_task_formatted_output
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- |
rw-r--r-- |
1,977 |
primer_task_input
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- |
rw-r--r-- |
14,476 |
primer_task_output
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- |
rw-r--r-- |
2,161 |
primer_task_th_input
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- |
rw-r--r-- |
15,049 |
primer_task_th_output
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- |
rw-r--r-- |
1,956 |
primer_thal_args_input
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- |
rw-r--r-- |
13,246 |
primer_thal_args_output
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- |
rw-r--r-- |
20,583 |
primer_thal_max_seq_error_input
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|
- |
rw-r--r-- |
20,676 |
primer_thal_max_seq_error_output
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- |
rwxr-xr-x |
58,068 |
primer_thermod_align_formatted_output
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- |
rwxr-xr-x |
12,821 |
primer_thermod_align_input
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|
- |
rwxr-xr-x |
110,421 |
primer_thermod_align_output
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|
- |
rw-r--r-- |
3,750 |
primer_three_prime_distance_input
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|
- |
rw-r--r-- |
35,216 |
primer_three_prime_distance_output
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- |
rw-r--r-- |
13,983 |
primer_tm_lc_masking_formatted_output
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|
- |
rw-r--r-- |
2,966 |
primer_tm_lc_masking_input
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|
- |
rw-r--r-- |
10,487 |
primer_tm_lc_masking_output
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|
- |
rwxr-xr-x |
2,214 |
primer_windows_newlines_input
|
|
- |
rw-r--r-- |
15,049 |
primer_windows_newlines_output
|
|
- |
rw-r--r-- |
546 |
repeat_lib1
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- |
rw-r--r-- |
0 |
repeat_lib2
|
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- |
rw-r--r-- |
6,849 |
repeat_lib3
|
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- |
rw-r--r-- |
895 |
repeat_lib4
|
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- |
rw-r--r-- |
7,168 |
repeat_lib5
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- |
rw-r--r-- |
7,169 |
repeat_lib6
|
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- |
rw-r--r-- |
354 |
test_compl_error_input
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- |
rw-r--r-- |
770 |
test_compl_error_output
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- |
rw-r--r-- |
1,179 |
test_left_to_right_of_right_input
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|
- |
rw-r--r-- |
2,414 |
test_left_to_right_of_right_output
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- |
rw-r--r-- |
2,469 |
th-w-other-tasks-settings.txt
|
|
- |
rw-r--r-- |
6,751 |
th-w-other-tasks_input
|
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- |
rw-r--r-- |
387,282 |
th-w-other-tasks_output
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|
- |
rwxr-xr-x |
230 |
thal_batch_hairpin_input
|
|
- |
rw-r--r-- |
1,462 |
thal_batch_hairpin_output
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|
- |
rwxr-xr-x |
430 |
thal_batch_input
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|
- |
rw-r--r-- |
1,918 |
thal_batch_output
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|
- |
rwxr-xr-x |
21,987 |
thal_input
|
|
- |
rwxr-xr-x |
18,687 |
thal_long_input
|
|
- |
rwxr-xr-x |
95 |
thal_long_temp_output
|
|
- |
rwxr-xr-x |
49,530 |
thal_output
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|
- |
rwxr-xr-x |
4,158 |
thal_temp_output
|
|
- |
rwxr-xr-x |
13,477 |
thal_test.pl
|
|
- |
rwxr-xr-x |
453 |
vgrep.pl
|
