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|
-s ccgcagtaagctgcgg -a HAIRPIN
-s1 ccgcagtaagctgcgg -a HAIRPIN
-s2 ccgcagtaagctgcgg -a HAIRPIN
-s2 ccgcagtaagctgcgg -a HAIRPIN -maxloop
-s1 ccgcagtaagctgcgg -s2 ccgcagtaagctgcgg -a ANY -maxloop -1
-s1 ccgcagtaagctgcgg -s2 ccgcagtaagctgcgg -a ANY -maxloop 0
-s1 ccgcagtaagctgcgg -s2 ccgcagtaagctgcgg -a ANY -maxloop 1
-s1 ccgcagtaagctgcgg -s2 ccgcagtaagctgcgg -dv
-s1 ccgcagtaagctgcgg -s2 ccgcagtaagctgcgg -mv
-s1 ccgcagtaagctgcgg -s2 ccgcagtaagctgcgg -n
-s1 ccgcagtaagctgcgg -s2 ccgcagtaagctgcgg -d
-s1 ccgcagtaagctgcgg -s2 ccgcagtaagctgcgg -t
-s1 ccgcagtaagctgcgg -s2 ccgcagtaagctgcgg -dv -1
-s1 ccgcagtaagctgcgg -s2 ccgcagtaagctgcgg -mv -1
-s1 ccgcagtaagctgcgg -s2 ccgcagtaagctgcgg -n -1
-s1 ccgcagtaagctgcgg -s2 ccgcagtaagctgcgg -d -1
-s1 ccgcagtaagctgcgg -s2 ccgcagtaagctgcgg -t -1
-s1 ccgcagtaagctgcgg -s2 ccgcagtaagctgcgg -d 0
-s1 AAAACCCGCTTTGCTAGCTACG -s2 AACCCGCTTGCTAGCAAAAAAAA -a END1
-s1 AAAACCCGCTTTGCTAGCTACG -s2 AACCCGCTTGCTAGCAAAAAAAA -a ANY
-s1 AAAACCCGCTTTGCTAGCTACG -s2 AACCCGCTTGCTAGCAAAAAAAA -a END2
-s1 AAAACCCGCTTTGCTAGCTACG -s2 AACCCGCTTGCTAGCAAAAAAAA -a HAIRPIN
-s1 AAAACCCGCTTTGCTAGCTACG -s2 AACCCGCTTGCTAGCAAAAAAAAAACCCGCTTGCTAGCAAAAAAAAAACCCGCTTGCTAGCAAAAAAAAAACCCGCTTGCTAGCAAAAAAAAAACCCGCTTGCTAGCAA -a END2
-s2 AACCCGCTTGCTAGCAAAAAAAAAACCCGCTTGCTAGCAAAAAAAAAACCCGCTTGCTAGCAAAAAAAAAACCCGCTTGCTAGCAAAAAAAAAACCCGCTTGCTAGCAA -a HAIRPIN
-s1 A -s2 A -maxloop 0
-s1 A -s2 A -maxloop 1
-s1 A -s2 A -maxloop 2
-s1 A -s2 T -maxloop 1
-s1 ATA -s2 TAT -a ANY
-s1 ATA -s2 TAT -a END1
-s1 ATA -s2 TAT -a END2
-s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG -maxloop 0 -a ANY
-s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG -maxloop 1 -a ANY
-s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG -maxloop 2 -a ANY
-s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG -maxloop 3 -a ANY
-s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG -a ANY
-s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG -a END1
-s2 AAACACACACACACACT -s1 TGGGGGTGTTGGGGTTGTGG -a END2
-s1 AAACACACACACACACT -a HAIRPIN
-s2 TGGGGGTGTTGGGGTTGTGG -a HAIRPIN
-s1 AAACGATCGTAGCGTTTCAGTCT -s2 AGTCTCTCTCTCTCTCTCTC -a END1
-s1 AAACGATCGTAGCGTTTCAGTCT -s2 AGTCTCTCTCTCTCTCTCTC -a END2
-s1 AAACGATCGTAGCGTTTCAGTCT -s3 AGTCTCTCTCTCTCTCTCTC -a ANY
-s1 AAACGATCGTAGCGTTTCAGTCT -a HAIRPIN
-s1 AGTCTCTCTCTCTCTCTCTC -a HAIRPIN
-s1 ACGCCGTTGCGCGCTGCTGCG -s2 TTTTTTTTTTTTTTTTTTA -a END1
-s2 ACGCCGTTGCGCGCTGCTGCG -s1 TTTTTTTTTTTTTTTTTTA -a END2
-s1 ACGCCGTTGCGCGCTGCTGCG -s2 TTTTTTTTTTTTTTTTTTA -a ANY
-s1 ACGCCGTTGCGCGCTGCTGCG -a HAIRPIN
-s2 TTTTTTTTTTTTTTTTTTA -a HAIRPIN
-s1 TTTTTTTTTTATTTTTTTTT -s2 GGGGGGGGGAGGGGGGGGG -a END1
-s1 TTTTTTTTTTATTTTTTTTT -s2 GGGGGGGGGAGGGGGGGGG -a END2
-s1 TTTTTTTTTTATTTTTTTTT -s2 GGGGGGGGGAGGGGGGGGG -a ANY
-s1 TTTTTTTTTTATTTTTTTTT -a HAIRPIN
-s1 GGGGGGGGGAGGGGGGGGG -a HAIRPIN
-s1 AAACGATCGATTTT -s2 AAACGATCGACCCC -a ANY
-s1 AAACGATCGATTTT -s2 AAACGATCGACCCC -a END1
-s1 AAACGATCGATTTT -s2 AAACGATCGACCCC -a END2
-s1 AAACGATCGATTTT -a HAIRPIN
-s2 AAACGATCGACCCC -a HAIRPIN
-s1 AAAAAAAAAAAAAAAT -s2 CCCCCCCCCCCCCT -a ANY
-s1 AAAAAAAAAAAAAAAT -s2 CCCCCCCCCCCCCT -a END1
-s1 AAAAAAAAAAAAAAAT -s2 CCCCCCCCCCCCCT -a END2
-s1 AAAAAAAAAAAAAAAT -a HAIRPIN
-s2 CCCCCCCCCCCCCT -a HAIRPIN
-s1 AAAAAAAAAAAAAAAT -s2 TCCCCCCCCCCCCC -a ANY
-s1 AAAAAAAAAAAAAAAT -s2 TCCCCCCCCCCCCC -a END1
-s1 AAAAAAAAAAAAAAAT -s2 TCCCCCCCCCCCCC -a END2
-s1 AAAAAAAAAAAAAAAT -a HAIRPIN
-s2 TCCCCCCCCCCCCC -a HAIRPIN
-s1 ACACACACACACACA -s2 TGTGTTGGTGTTGTTGTGTG -a ANY
-s1 ACACACACACACACA -s2 TGTGTTGGTGTTGTTGTGTG -a END1
-s1 ACACACACACACACA -s2 TGTGTTGGTGTTGTTGTGTG -a END2
-s1 ACACACACACACACA -a HAIRPIN
-s2 TGTGTTGGTGTTGTTGTGTG -a HAIRPIN
-s1 TAAAAAAAAAAAAAA -s2 GGGGGGGTGGGGGGGGG -a ANY
-s1 TAAAAAAAAAAAAAA -s2 GGGGGGGTGGGGGGGGG -a END1
-s1 TAAAAAAAAAAAAAA -s2 GGGGGGGTGGGGGGGGG -a END2
-s1 TAAAAAAAAAAAAAA -a HAIRPIN
-s2 GGGGGGGTGGGGGGGGG -a HAIRPIN
-s1 TAAAAAAAAAAAAAA -s2 GGGGGGGGGGGGGGT -a ANY
-s1 TAAAAAAAAAAAAAA -s2 GGGGGGGGGGGGGGT -a END1
-s1 TAAAAAAAAAAAAAA -s2 GGGGGGGGGGGGGGT -a END2
-s1 TAAAAAAAAAAAAAA -a HAIRPIN
-s2 GGGGGGGGGGGGGGT -a HAIRPIN
-s1 TAAAAAAAAAAAAAA -s2 TGGGGGGGGGGGGGGG -a ANY
-s1 TAAAAAAAAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END1
-s1 TAAAAAAAAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END2
-s1 TAAAAAAAAAAAAAA -a HAIRPIN
-s2 TGGGGGGGGGGGGGGG -a HAIRPIN
-s1 AAAAAAATAAAAAAA -s2 TGGGGGGGGGGGGGGG -a ANY
-s1 AAAAAAATAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END1
-s1 AAAAAAATAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END2
-s1 AAAAAAATAAAAAAA -a HAIRPIN
-s2 TGGGGGGGGGGGGGGG -a HAIRPIN
-s1 AAAAAAATAAAAAAA -s2 GGGGGGGGGGGGGGT -a ANY
-s1 AAAAAAATAAAAAAA -s2 GGGGGGGGGGGGGGT -a END1
-s1 AAAAAAATAAAAAAA -s2 GGGGGGGGGGGGGGT -a END2
-s1 AAAAAAATAAAAAAA -a HAIRPIN
-s2 GGGGGGGGGGGGGGT -a HAIRPIN
-s1 AAAAAAAAAAAAAAT -s2 GGGGGGTGGGGGGGG -a ANY
-s1 AAAAAAAAAAAAAAT -s2 GGGGGGTGGGGGGGG -a END1
-s1 AAAAAAAAAAAAAAT -s2 GGGGGGTGGGGGGGG -a END2
-s1 AAAAAAAAAAAAAAT -a HAIRPIN
-s2 GGGGGGTGGGGGGGG -a HAIRPIN
-s1 TAAAAAAAAAAAAAA -s2 GGGGGGTGGGGGGGG -a ANY
-s1 TAAAAAAAAAAAAAA -s2 GGGGGGTGGGGGGGG -a END1
-s1 TAAAAAAAAAAAAAA -s2 GGGGGGTGGGGGGGG -a END2
-s1 TAAAAAAAAAAAAAA -a HAIRPIN
-s2 GGGGGGTGGGGGGGG -a HAIRPIN
-maxloop 3 -s1 AAAACCCGCTTTGCTAGCTACG -s2 AACCCGCTTGCTAGCAAAAAAAA -a ANY
-maxloop 3 -s1 AAAACCCGCTTTGCTAGCTACG -s2 AACCCGCTTGCTAGCAAAAAAAA -a END1
-maxloop 3 -s1 AAAACCCGCTTTGCTAGCTACG -s2 AACCCGCTTGCTAGCAAAAAAAA -a END2
-maxloop 3 -s1 AAAACCCGCTTTGCTAGCTACG -a HAIRPIN
-maxloop 3 -s2 AACCCGCTTGCTAGCAAAAAAAA -a HAIRPIN
-maxloop 3 -s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG -a ANY
-maxloop 3 -s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG -a END1
-maxloop 3 -s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG -a END2
-maxloop 3 -s1 AAACACACACACACACT -a HAIRPIN
-maxloop 3 -s2 TGGGGGTGTTGGGGTTGTGG -a HAIRPIN
-maxloop 3 -s1 AAACGATCGTAGCGTTTCAGTCT -s2 AGTCTCTCTCTCTCTCTCTC -a ANY
-maxloop 3 -s1 AAACGATCGTAGCGTTTCAGTCT -s2 AGTCTCTCTCTCTCTCTCTC -a END1
-maxloop 3 -s1 AAACGATCGTAGCGTTTCAGTCT -s2 AGTCTCTCTCTCTCTCTCTC -a END2
-maxloop 3 -s1 AAACGATCGTAGCGTTTCAGTCT -a HAIRPIN
-maxloop 3 -s2 AGTCTCTCTCTCTCTCTCTC -a HAIRPIN
-maxloop 3 -s1 ACGCCGTTGCGCGCTGCTGCG -s2 TTTTTTTTTTTTTTTTTTA -a ANY
-maxloop 3 -s1 ACGCCGTTGCGCGCTGCTGCG -s2 TTTTTTTTTTTTTTTTTTA -a END1
-maxloop 3 -s1 ACGCCGTTGCGCGCTGCTGCG -s2 TTTTTTTTTTTTTTTTTTA -a END2
-maxloop 3 -s1 ACGCCGTTGCGCGCTGCTGCG -a HAIRPIN
-maxloop 3 -s2 TTTTTTTTTTTTTTTTTTA -a HAIRPIN
-maxloop 3 -s1 TTTTTTTTTTATTTTTTTTT -s2 GGGGGGGGAGGGGGGGGG -a ANY
-maxloop 3 -s1 TTTTTTTTTTATTTTTTTTT -s2 GGGGGGGGAGGGGGGGGG -a END1
-maxloop 3 -s1 TTTTTTTTTTATTTTTTTTT -s2 GGGGGGGGAGGGGGGGGG -a END2
-maxloop 3 -s1 TTTTTTTTTTATTTTTTTTT -a HAIRPIN
-maxloop 3 -s2 GGGGGGGGAGGGGGGGGG -a HAIRPIN
-maxloop 3 -s1 AACCGGGTCTTTTTTTAACC -s2 AACCTTAAAAAAAAACCGG -a ANY
-maxloop 3 -s1 AACCGGGTCTTTTTTTAACC -s2 AACCTTAAAAAAAAACCGG -a END1
-maxloop 3 -s1 AACCGGGTCTTTTTTTAACC -s2 AACCTTAAAAAAAAACCGG -a END2
-maxloop 3 -s1 AACCGGGTCTTTTTTTAACC -a HAIRPIN
-maxloop 3 -s2 AACCTTAAAAAAAAACCGG -a HAIRPIN
-maxloop 3 -s1 AAACGATCGATTTT -s2 AAACGATCGACCCC -a ANY
-maxloop 3 -s1 AAACGATCGATTTT -s2 AAACGATCGACCCC -a END1
-maxloop 3 -s1 AAACGATCGATTTT -s2 AAACGATCGACCCC -a END2
-maxloop 3 -s1 AAACGATCGATTTT -a HAIRPIN
-maxloop 3 -s2 AAACGATCGACCCC -a HAIRPIN
-maxloop 3 -s1 AAAAAAAAAAAAAAAT -s2 CCCCCCCCCCCCCT -a ANY
-maxloop 3 -s1 AAAAAAAAAAAAAAAT -s2 CCCCCCCCCCCCCT -a END1
-maxloop 3 -s1 AAAAAAAAAAAAAAAT -s2 CCCCCCCCCCCCCT -a END2
-maxloop 3 -s1 AAAAAAAAAAAAAAAT -a HAIRPIN
-maxloop 3 -s2 CCCCCCCCCCCCCT -a HAIRPIN
-maxloop 3 -s1 AAAAAAAAAAAAAAAT -s2 TCCCCCCCCCCCCC -a ANY
-maxloop 3 -s1 AAAAAAAAAAAAAAAT -s2 TCCCCCCCCCCCCC -a END1
-maxloop 3 -s1 AAAAAAAAAAAAAAAT -s2 TCCCCCCCCCCCCC -a END2
-maxloop 3 -s1 AAAAAAAAAAAAAAAT -a HAIRPIN
-maxloop 3 -s2 TCCCCCCCCCCCCC -a HAIRPIN
-maxloop 3 -s1 ACACACACACACACA -s2 TGTGTTGGTGTTGTTGTGTG -a ANY
-maxloop 3 -s1 ACACACACACACACA -s2 TGTGTTGGTGTTGTTGTGTG -a END1
-maxloop 3 -s1 ACACACACACACACA -s2 TGTGTTGGTGTTGTTGTGTG -a END2
-maxloop 3 -s1 ACACACACACACACA -a HAIRPIN
-maxloop 3 -s2 TGTGTTGGTGTTGTTGTGTG -a HAIRPIN
-maxloop 3 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGTGGGGGGGGG -a ANY
-maxloop 3 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGTGGGGGGGGG -a END1
-maxloop 3 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGTGGGGGGGGG -a END2
-maxloop 3 -s1 TAAAAAAAAAAAAAA -a HAIRPIN
-maxloop 3 -s2 GGGGGGGTGGGGGGGGG -a HAIRPIN
-maxloop 3 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGGGGGGGGT -a ANY
-maxloop 3 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGGGGGGGGT -a END1
-maxloop 3 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGGGGGGGGT -a END2
-maxloop 3 -s1 TAAAAAAAAAAAAAA -a HAIRPIN
-maxloop 3 -s2 GGGGGGGGGGGGGGT -a HAIRPIN
-maxloop 3 -s1 TAAAAAAAAAAAAAA -s2 TGGGGGGGGGGGGGGG -a ANY
-maxloop 3 -s1 TAAAAAAAAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END1
-maxloop 3 -s1 TAAAAAAAAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END2
-maxloop 3 -s1 TAAAAAAAAAAAAAA -a HAIRPIN
-maxloop 3 -s2 TGGGGGGGGGGGGGGG -a HAIRPIN
-maxloop 3 -s1 AAAAAAATAAAAAAA -s2 TGGGGGGGGGGGGGGG -a ANY
-maxloop 3 -s1 AAAAAAATAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END1
-maxloop 3 -s1 AAAAAAATAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END2
-maxloop 3 -s1 AAAAAAATAAAAAAA -a HAIRPIN
-maxloop 3 -s2 TGGGGGGGGGGGGGGG -a HAIRPIN
-maxloop 3 -s1 AAAAAAATAAAAAAA -s2 GGGGGGGGGGGGGGT -a ANY
-maxloop 3 -s1 AAAAAAATAAAAAAA -s2 GGGGGGGGGGGGGGT -a END1
-maxloop 3 -s1 AAAAAAATAAAAAAA -s2 GGGGGGGGGGGGGGT -a END2
-maxloop 3 -s1 AAAAAAATAAAAAAA -a HAIRPIN
-maxloop 3 -s2 GGGGGGGGGGGGGGT -a HAIRPIN
-maxloop 3 -s1 AAAAAAAAAAAAAAT -s2 GGGGGGTGGGGGGGG -a ANY
-maxloop 3 -s1 AAAAAAAAAAAAAAT -s2 GGGGGGTGGGGGGGG -a END1
-maxloop 3 -s1 AAAAAAAAAAAAAAT -s2 GGGGGGTGGGGGGGG -a END2
-maxloop 3 -s1 AAAAAAAAAAAAAAT -a HAIRPIN
-maxloop 3 -s2 GGGGGGTGGGGGGGG -a HAIRPIN
-maxloop 3 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGTGGGGGGGG -a ANY
-maxloop 3 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGTGGGGGGGG -a END1
-maxloop 3 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGTGGGGGGGG -a END2
-maxloop 3 -s1 TAAAAAAAAAAAAAA -a HAIRPIN
-maxloop 3 -s2 GGGGGGTGGGGGGGG -a HAIRPIN
-maxloop 1 -s1 AAAACCCGCTTTGCTAGCTACG -s2 AACCCGCTTGCTAGCAAAAAAAA -a ANY
-maxloop 1 -s1 AAAACCCGCTTTGCTAGCTACG -s2 AACCCGCTTGCTAGCAAAAAAAA -a END1
-maxloop 1 -s1 AAAACCCGCTTTGCTAGCTACG -s2 AACCCGCTTGCTAGCAAAAAAAA -a END2
-maxloop 1 -s1 AAAACCCGCTTTGCTAGCTACG -a HAIRPIN
-maxloop 1 -s2 AACCCGCTTGCTAGCAAAAAAAA -a HAIRPIN
-maxloop 1 -s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG -a ANY
-maxloop 1 -s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG -a END1
-maxloop 1 -s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG -a END2
-maxloop 1 -s1 AAACACACACACACACT -a HAIRPIN
-maxloop 1 -s2 TGGGGGTGTTGGGGTTGTGG -a HAIRPIN
-maxloop 1 -s1 AAACGATCGTAGCGTTTCAGTCT -s2 AGTCTCTCTCTCTCTCTCTC -a ANY
-maxloop 1 -s1 AAACGATCGTAGCGTTTCAGTCT -s2 AGTCTCTCTCTCTCTCTCTC -a END1
-maxloop 1 -s1 AAACGATCGTAGCGTTTCAGTCT -s2 AGTCTCTCTCTCTCTCTCTC -a END2
-maxloop 1 -s1 AAACGATCGTAGCGTTTCAGTCT -a HAIRPIN
-maxloop 1 -s2 AGTCTCTCTCTCTCTCTCTC -a HAIRPIN
-maxloop 1 -s1 ACGCCGTTGCGCGCTGCTGCG -s2 TTTTTTTTTTTTTTTTTTA -a ANY
-maxloop 1 -s1 ACGCCGTTGCGCGCTGCTGCG -s2 TTTTTTTTTTTTTTTTTTA -a END1
-maxloop 1 -s1 ACGCCGTTGCGCGCTGCTGCG -s2 TTTTTTTTTTTTTTTTTTA -a END2
-maxloop 1 -s1 ACGCCGTTGCGCGCTGCTGCG -a HAIRPIN
-maxloop 1 -s2 TTTTTTTTTTTTTTTTTTA -a HAIRPIN
-maxloop 1 -s1 TTTTTTTTTTATTTTTTTTT -s2 GGGGGGGGAGGGGGGGGG -a ANY
-maxloop 1 -s1 TTTTTTTTTTATTTTTTTTT -s2 GGGGGGGGAGGGGGGGGG -a END1
-maxloop 1 -s1 TTTTTTTTTTATTTTTTTTT -s2 GGGGGGGGAGGGGGGGGG -a END2
-maxloop 1 -s1 TTTTTTTTTTATTTTTTTTT -a HAIRPIN
-maxloop 1 -s2 GGGGGGGGAGGGGGGGGG -a HAIRPIN
-maxloop 1 -s1 AACCGGGTCTTTTTTTAACC -s2 AACCTTAAAAAAAAACCGG -a ANY
-maxloop 1 -s1 AACCGGGTCTTTTTTTAACC -s2 AACCTTAAAAAAAAACCGG -a END1
-maxloop 1 -s1 AACCGGGTCTTTTTTTAACC -s2 AACCTTAAAAAAAAACCGG -a END2
-maxloop 1 -s1 AACCGGGTCTTTTTTTAACC -a HAIRPIN
-maxloop 1 -s2 AACCTTAAAAAAAAACCGG -a HAIRPIN
-maxloop 1 -s1 AAACGATCGATTTT -s2 AAACGATCGACCCC -a ANY
-maxloop 1 -s1 AAACGATCGATTTT -s2 AAACGATCGACCCC -a END1
-maxloop 1 -s1 AAACGATCGATTTT -s2 AAACGATCGACCCC -a END2
-maxloop 1 -s1 AAACGATCGATTTT -a HAIRPIN
-maxloop 1 -s2 AAACGATCGACCCC -a HAIRPIN
-maxloop 1 -s1 AAAAAAAAAAAAAAAT -s2 CCCCCCCCCCCCCT -a ANY
-maxloop 1 -s1 AAAAAAAAAAAAAAAT -s2 CCCCCCCCCCCCCT -a END1
-maxloop 1 -s1 AAAAAAAAAAAAAAAT -s2 CCCCCCCCCCCCCT -a END2
-maxloop 1 -s1 AAAAAAAAAAAAAAAT -a HAIRPIN
-maxloop 1 -s2 CCCCCCCCCCCCCT -a HAIRPIN
-maxloop 1 -s1 AAAAAAAAAAAAAAAT -s2 TCCCCCCCCCCCCC -a ANY
-maxloop 1 -s1 AAAAAAAAAAAAAAAT -s2 TCCCCCCCCCCCCC -a END1
-maxloop 1 -s1 AAAAAAAAAAAAAAAT -s2 TCCCCCCCCCCCCC -a END2
-maxloop 1 -s1 AAAAAAAAAAAAAAAT -a HAIRPIN
-maxloop 1 -s2 TCCCCCCCCCCCCC -a HAIRPIN
-maxloop 1 -s1 ACACACACACACACA -s2 TGTGTTGGTGTTGTTGTGTG -a ANY
-maxloop 1 -s1 ACACACACACACACA -s2 TGTGTTGGTGTTGTTGTGTG -a END1
-maxloop 1 -s1 ACACACACACACACA -s2 TGTGTTGGTGTTGTTGTGTG -a END2
-maxloop 1 -s1 ACACACACACACACA -a HAIRPIN
-maxloop 1 -s2 TGTGTTGGTGTTGTTGTGTG -a HAIRPIN
-maxloop 1 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGTGGGGGGGGG -a ANY
-maxloop 1 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGTGGGGGGGGG -a END1
-maxloop 1 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGTGGGGGGGGG -a END2
-maxloop 1 -s1 TAAAAAAAAAAAAAA -a HAIRPIN
-maxloop 1 -s2 GGGGGGGTGGGGGGGGG -a HAIRPIN
-maxloop 1 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGGGGGGGGT -a ANY
-maxloop 1 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGGGGGGGGT -a END1
-maxloop 1 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGGGGGGGGT -a END2
-maxloop 1 -s1 TAAAAAAAAAAAAAA -a HAIRPIN
-maxloop 1 -s2 GGGGGGGGGGGGGGT -a HAIRPIN
-maxloop 1 -s1 TAAAAAAAAAAAAAA -s2 TGGGGGGGGGGGGGGG -a ANY
-maxloop 1 -s1 TAAAAAAAAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END1
-maxloop 1 -s1 TAAAAAAAAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END2
-maxloop 1 -s1 TAAAAAAAAAAAAAA -a HAIRPIN
-maxloop 1 -s2 TGGGGGGGGGGGGGGG -a HAIRPIN
-maxloop 1 -s1 AAAAAAATAAAAAAA -s2 TGGGGGGGGGGGGGGG -a ANY
-maxloop 1 -s1 AAAAAAATAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END1
-maxloop 1 -s1 AAAAAAATAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END2
-maxloop 1 -s1 AAAAAAATAAAAAAA -a HAIRPIN
-maxloop 1 -s2 TGGGGGGGGGGGGGGG -a HAIRPIN
-maxloop 1 -s1 AAAAAAATAAAAAAA -s2 GGGGGGGGGGGGGGT -a ANY
-maxloop 1 -s1 AAAAAAATAAAAAAA -s2 GGGGGGGGGGGGGGT -a END1
-maxloop 1 -s1 AAAAAAATAAAAAAA -s2 GGGGGGGGGGGGGGT -a END2
-maxloop 1 -s1 AAAAAAATAAAAAAA -a HAIRPIN
-maxloop 1 -s2 GGGGGGGGGGGGGGT -a HAIRPIN
-maxloop 1 -s1 AAAAAAAAAAAAAAT -s2 GGGGGGTGGGGGGGG -a ANY
-maxloop 1 -s1 AAAAAAAAAAAAAAT -s2 GGGGGGTGGGGGGGG -a END1
-maxloop 1 -s1 AAAAAAAAAAAAAAT -s2 GGGGGGTGGGGGGGG -a END2
-maxloop 1 -s1 AAAAAAAAAAAAAAT -a HAIRPIN
-maxloop 1 -s2 GGGGGGTGGGGGGGG -a HAIRPIN
-maxloop 1 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGTGGGGGGGG -a ANY
-maxloop 1 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGTGGGGGGGG -a END1
-maxloop 1 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGTGGGGGGGG -a END2
-maxloop 1 -s1 TAAAAAAAAAAAAAA -a HAIRPIN
-maxloop 1 -s2 GGGGGGTGGGGGGGG -a HAIRPIN
-maxloop 0 -s1 AAAACCCGCTTTGCTAGCTACG -s2 AACCCGCTTGCTAGCAAAAAAAA -a ANY
-maxloop 0 -s1 AAAACCCGCTTTGCTAGCTACG -s2 AACCCGCTTGCTAGCAAAAAAAA -a END1
-maxloop 0 -s1 AAAACCCGCTTTGCTAGCTACG -s2 AACCCGCTTGCTAGCAAAAAAAA -a END2
-s1 AAAACCCGCTTTGCTAGCTACG -a HAIRPIN
-s2 AACCCGCTTGCTAGCAAAAAAAA -a HAIRPIN
-maxloop 0 -s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG -a ANY
-maxloop 0 -s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG -a END1
-maxloop 0 -s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG -a END2
-maxloop 0 -s1 AAACACACACACACACT -a HAIRPIN
-maxloop 0 -s2 TGGGGGTGTTGGGGTTGTGG -a HAIRPIN
-maxloop 0 -s1 AAACGATCGTAGCGTTTCAGTCT -s2 AGTCTCTCTCTCTCTCTCTC -a ANY
-maxloop 0 -s1 AAACGATCGTAGCGTTTCAGTCT -s2 AGTCTCTCTCTCTCTCTCTC -a END1
-maxloop 0 -s1 AAACGATCGTAGCGTTTCAGTCT -s2 AGTCTCTCTCTCTCTCTCTC -a END2
-maxloop 0 -s1 AAACGATCGTAGCGTTTCAGTCT -a HAIRPIN
-maxloop 0 -s2 AGTCTCTCTCTCTCTCTCTC -a HAIRPIN
-maxloop 0 -s1 ACGCCGTTGCGCGCTGCTGCG -s2 TTTTTTTTTTTTTTTTTTA -a ANY
-maxloop 0 -s1 ACGCCGTTGCGCGCTGCTGCG -s2 TTTTTTTTTTTTTTTTTTA -a END1
-maxloop 0 -s1 ACGCCGTTGCGCGCTGCTGCG -s2 TTTTTTTTTTTTTTTTTTA -a END2
-maxloop 0 -s1 ACGCCGTTGCGCGCTGCTGCG -a HAIRPIN
-maxloop 0 -s2 TTTTTTTTTTTTTTTTTTA -a HAIRPIN
-maxloop 0 -s1 TTTTTTTTTTATTTTTTTTT -s2 GGGGGGGGAGGGGGGGGG -a ANY
-maxloop 0 -s1 TTTTTTTTTTATTTTTTTTT -s2 GGGGGGGGAGGGGGGGGG -a END1
-maxloop 0 -s1 TTTTTTTTTTATTTTTTTTT -s2 GGGGGGGGAGGGGGGGGG -a END2
-maxloop 0 -s1 TTTTTTTTTTATTTTTTTTT -a HAIRPIN
-maxloop 0 -s2 GGGGGGGGAGGGGGGGGG -a HAIRPIN
-maxloop 0 -s1 AACCGGGTCTTTTTTTAACC -s2 AACCTTAAAAAAAAACCGG -a ANY
-maxloop 0 -s1 AACCGGGTCTTTTTTTAACC -s2 AACCTTAAAAAAAAACCGG -a END1
-maxloop 0 -s1 AACCGGGTCTTTTTTTAACC -s2 AACCTTAAAAAAAAACCGG -a END2
-maxloop 0 -s1 AACCGGGTCTTTTTTTAACC -a HAIRPIN
-maxloop 0 -s2 AACCTTAAAAAAAAACCGG -a HAIRPIN
-maxloop 0 -s1 AAACGATCGATTTT -s2 AAACGATCGACCCC -a ANY
-maxloop 0 -s1 AAACGATCGATTTT -s2 AAACGATCGACCCC -a END1
-maxloop 0 -s1 AAACGATCGATTTT -s2 AAACGATCGACCCC -a END2
-maxloop 0 -s1 AAACGATCGATTTT -a HAIRPIN
-maxloop 0 -s2 AAACGATCGACCCC -a HAIRPIN
-maxloop 0 -s1 AAAAAAAAAAAAAAAT -s2 CCCCCCCCCCCCCT -a ANY
-maxloop 0 -s1 AAAAAAAAAAAAAAAT -s2 CCCCCCCCCCCCCT -a END1
-maxloop 0 -s1 AAAAAAAAAAAAAAAT -s2 CCCCCCCCCCCCCT -a END2
-maxloop 0 -s1 AAAAAAAAAAAAAAAT -a HAIRPIN
-maxloop 0 -s2 CCCCCCCCCCCCCT -a HAIRPIN
-maxloop 0 -s1 AAAAAAAAAAAAAAAT -s2 TCCCCCCCCCCCCC -a ANY
-maxloop 0 -s1 AAAAAAAAAAAAAAAT -s2 TCCCCCCCCCCCCC -a END1
-maxloop 0 -s1 AAAAAAAAAAAAAAAT -s2 TCCCCCCCCCCCCC -a END2
-maxloop 0 -s1 AAAAAAAAAAAAAAAT -a HAIRPIN
-maxloop 0 -s2 TCCCCCCCCCCCCC -a HAIRPIN
-maxloop 0 -s1 ACACACACACACACA -s2 TGTGTTGGTGTTGTTGTGTG -a ANY
-maxloop 0 -s1 ACACACACACACACA -s2 TGTGTTGGTGTTGTTGTGTG -a END1
-maxloop 0 -s1 ACACACACACACACA -s2 TGTGTTGGTGTTGTTGTGTG -a END2
-maxloop 0 -s1 ACACACACACACACA -a HAIRPIN
-maxloop 0 -s2 TGTGTTGGTGTTGTTGTGTG -a HAIRPIN
-maxloop 0 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGTGGGGGGGGG -a ANY
-maxloop 0 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGTGGGGGGGGG -a END1
-maxloop 0 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGTGGGGGGGGG -a END2
-maxloop 0 -s1 TAAAAAAAAAAAAAA -a HAIRPIN
-maxloop 0 -s2 GGGGGGGTGGGGGGGGG -a HAIRPIN
-maxloop 0 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGGGGGGGGT -a ANY
-maxloop 0 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGGGGGGGGT -a END1
-maxloop 0 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGGGGGGGGGT -a END2
-maxloop 0 -s1 TAAAAAAAAAAAAAA -a HAIRPIN
-maxloop 0 -s2 GGGGGGGGGGGGGGT -a HAIRPIN
-maxloop 0 -s1 TAAAAAAAAAAAAAA -s2 TGGGGGGGGGGGGGGG -a ANY
-maxloop 0 -s1 TAAAAAAAAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END1
-maxloop 0 -s1 TAAAAAAAAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END2
-maxloop 0 -s1 TAAAAAAAAAAAAAA -a HAIRPIN
-maxloop 0 -s2 TGGGGGGGGGGGGGGG -a HAIRPIN
-maxloop 0 -s1 AAAAAAATAAAAAAA -s2 TGGGGGGGGGGGGGGG -a ANY
-maxloop 0 -s1 AAAAAAATAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END1
-maxloop 0 -s1 AAAAAAATAAAAAAA -s2 TGGGGGGGGGGGGGGG -a END2
-maxloop 0 -s1 AAAAAAATAAAAAAA -a HAIRPIN
-maxloop 0 -s2 TGGGGGGGGGGGGGGG -a HAIRPIN
-maxloop 0 -s1 AAAAAAATAAAAAAA -s2 GGGGGGGGGGGGGGT -a ANY
-maxloop 0 -s1 AAAAAAATAAAAAAA -s2 GGGGGGGGGGGGGGT -a END1
-maxloop 0 -s1 AAAAAAATAAAAAAA -s2 GGGGGGGGGGGGGGT -a END2
-maxloop 0 -s1 AAAAAAATAAAAAAA -a HAIRPIN
-maxloop 0 -s2 GGGGGGGGGGGGGGT -a HAIRPIN
-maxloop 0 -s1 AAAAAAAAAAAAAAT -s2 GGGGGGTGGGGGGGG -a ANY
-maxloop 0 -s1 AAAAAAAAAAAAAAT -s2 GGGGGGTGGGGGGGG -a END1
-maxloop 0 -s1 AAAAAAAAAAAAAAT -s2 GGGGGGTGGGGGGGG -a END2
-maxloop 0 -s1 AAAAAAAAAAAAAAT -a HAIRPIN
-maxloop 0 -s2 GGGGGGTGGGGGGGG -a HAIRPIN
-maxloop 0 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGTGGGGGGGG -a ANY
-maxloop 0 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGTGGGGGGGG -a END1
-maxloop 0 -s1 TAAAAAAAAAAAAAA -s2 GGGGGGTGGGGGGGG -a END2
-maxloop 0 -s1 TAAAAAAAAAAAAAA -a HAIRPIN
-maxloop 0 -s2 GGGGGGTGGGGGGGG -a HAIRPIN
-s1 AAGATCAGCTAGCTAGCTAGC -s2 TTTTTAAGATCAGCTAGCTAGCTAGCTTTTTTTT -a ANY
-s1 AAGATCAGCTAGCTAGCTAGC -s2 TTTTTAAGATCAGCTAGCTAGCTAGCTTTTTTTT -a END1
-s1 AAGATCAGCTAGCTAGCTAGC -s2 TTTTTAAGATCAGCTAGCTAGCTAGCTTTTTTTT -a END2
-s1 AAGATCAGCTAGCTAGCTAGC -a HAIRPIN
-s2 TTTTTAAGATCAGCTAGCTAGCTAGCTTTTTTTT -a HAIRPIN
-s1 GATCAGCTAGCTTTTT -s2 TTTTTTGATCAGCTAGCTTTTT -a ANY
-s1 GATCAGCTAGCTTTTT -s2 TTTTTTGATCAGCTAGCTTTTT -a END1
-s1 GATCAGCTAGCTTTTT -s2 TTTTTTGATCAGCTAGCTTTTT -a END2
-s1 GATCAGCTAGCTTTTT -a HAIRPIN
-s2 TTTTTTGATCAGCTAGCTTTTT -a HAIRPIN
-s1 AAGATCAGCTAGCTAGCTAGCTTTTT -s2 TTTTTCCGATCAGCTAGCTAGCTAGCTTTTTTT -a ANY
-s1 AAGATCAGCTAGCTAGCTAGCTTTTT -s2 TTTTTCCGATCAGCTAGCTAGCTAGCTTTTTTT -a END1
-s1 AAGATCAGCTAGCTAGCTAGCTTTTT -s2 TTTTTCCGATCAGCTAGCTAGCTAGCTTTTTTT -a END2
-s1 AAGATCAGCTAGCTAGCTAGCTTTTT -a HAIRPIN
-s2 TTTTTCCGATCAGCTAGCTAGCTAGCTTTTTTT -a HAIRPIN
-s1 CGATATATTTGGTCTATA -s2 CGATATATTTCCGGTCTATA -a ANY
-s1 CGATATATTTGGTCTATA -s2 CGATATATTTCCGGTCTATA -a END1
-s1 CGATATATTTGGTCTATA -s2 CGATATATTTCCGGTCTATA -a END2
-s1 CGATATATTTGGTCTATA -a HAIRPIN
-s2 CGATATATTTCCGGTCTATA -a HAIRPIN
-s1 CGATATATTTGGTCTATA -s2 CGATATATTTCCGGTCTATA -mv 1000
-s1 CGATATATTTGGTCTATA -s2 CGATATATTTCCGGTCTATA -mv 1000 -dv 2.5
-s1 CGATATATTTGGTCTATA -s2 CGATATATTTCCGGTCTATA -mv 50 -dv 2.5
-s1 CGATATATTTGGTCTATA -s2 CGATATATTTCCGGTCTATA -mv 50 -dv 2.5 -n 0.8
-s1 CGATATATTTGGTCTATA -s2 CGATATATTTCCGGTCTATA -d 100
-s1 CGATATATTTGGTCTATA -s2 CGATATATTTCCGGTCTATA -d 1000
-s1 CGATATATTTGGTCTATA -s2 CGATATATTTCCGGTCTATA -mv 1000 -d 1000
-s1 CGATATATTTGGTCTATA -s2 CGATATATTTCCGGTCTATA -t 10
-s1 CGATATATTTGGTCTATA -s2 CGATATATTTCCGGTCTATA -t 37
-s1 CGATATATTTGGTCTATA -s2 CGATATATTTCCGGTCTATA -t 55
-s1 CGATATATTTGGTCTATA -s2 CGATATATTTCCGGTCTATA -t 100
-s1 CGATATATTTGGTCTATA -a HAIRPIN -mv 1000 -dv 2.5 -n 0.8
-s2 CGATATATTTCCGGTCTATA -a HAIRPIN -mv 1000 -dv 2.5 -n 2.5
-s2 CGATATATTTCCGGTCTATA -a HAIRPIN -mv 1000 -dv 0 -n 2.5
-s2 CGATATATTTCCGGTCTATA -a HAIRPIN -mv 1000 -dv 0 -n 0
-s2 CGATATATTTCCGGTCTATA -a HAIRPIN -mv 1000 -dv 2.5 -n 0
-s1 gtgtgcaaaa -s2 ttttgcacc
-s1 agtgtagtacgg -s2 caaaaccgtgtc
-s1 agtgtagtacgg -s2 caaaaccgtgtc -mv 1000
-s1 agtgtagtacgg -s2 caaaaccgtgtc -maxloop 1
-s1 agtgtagtacgg -s2 caaaaccgtgtc -maxloop 3
-s1 agtgtagtacgg -s2 caaaaccgtgtc -a END1
-s1 agtgtagtacgg -s2 caaaaccgtgtc -a END2
-s1 CCAAAACCCATGATGATGATGGGTTTTGG -a HAIRPIN
-s1 CCCCAAAACCCATGATGATGATGGGTTTTGGGG -a HAIRPIN
-s1 AAACACACACACACACT -s2 TGGGGGTGTTGGGGTTGTGG
-s2 AAACACACACACACACT -s1 TGGGGGTGTTGGGGTTGTGG
-s1 ACACACACACACACA -s2 TGTGTTGGTGTTGTTGTGTG
-s2 ACACACACACACACA -s1 TGTGTTGGTGTTGTTGTGTG
-s1 ACTGGAAAGAGGAAGGACTGGT -s2 TGGGACATCTCTATACCTTCCTCT
-s2 ACTGGAAAGAGGAAGGACTGGT -s1 TGGGACATCTCTATACCTTCCTCT
-s1 AGCTATCC -s2 GTATAGCA
-s2 AGCTATCC -s1 GTATAGCA
-s1 AAACGATCGTAGCGTTTCAGTCT -s2 AGTCTCTCTCTCTCTCTCTC
-s2 AAACGATCGTAGCGTTTCAGTCT -s1 AGTCTCTCTCTCTCTCTCTC
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