File: primer_syntax_input

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file content (147 lines) | stat: -rw-r--r-- 4,582 bytes parent folder | download | duplicates (8)
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SEQUENCE_ID=syntax01
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21
PRIMER_EXPLAIN_FLAG=1
P3_COMMENT="should succeeed"
=
SEQUENCE_ID=syntax02
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21
P3_COMMENT="should succeeed"
=
SEQUENCE_ID=syntax03
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21
P3_COMMENT="should succeeed"
=
SEQUENCE_ID=syntax04
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21
P3_COMMENT="should succeeed"
=
SEQUENCE_ID=syntax05
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5 2,
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21
P3_COMMENT="should cause error"
=
SEQUENCE_ID=syntax06
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5 2
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21
P3_COMMENT="should cause error"
=
SEQUENCE_ID=syntax07
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21 0,1
P3_COMMENT="should succeed"
=
SEQUENCE_ID=syntax08
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21,1
P3_COMMENT="should cause error"
=
SEQUENCE_ID=syntax09
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=
P3_COMMENT="should succeed"
=
SEQUENCE_ID=syntax10
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=    
P3_COMMENT="should succeed (whitespace in int. oligo. excl. region)"
=
SEQUENCE_ID=syntax11
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21.0
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21
PRIMER_EXPLAIN_FLAG=1
P3_COMMENT=should fail with syntax error
=
SEQUENCE_ID=syntax12
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37.01,21
PRIMER_EXPLAIN_FLAG=1
P3_COMMENT=should fail with type error.
=