1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147
|
SEQUENCE_ID=syntax01
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21
PRIMER_EXPLAIN_FLAG=1
P3_COMMENT="should succeeed"
=
SEQUENCE_ID=syntax02
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21
P3_COMMENT="should succeeed"
=
SEQUENCE_ID=syntax03
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21
P3_COMMENT="should succeeed"
=
SEQUENCE_ID=syntax04
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21
P3_COMMENT="should succeeed"
=
SEQUENCE_ID=syntax05
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5 2,
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21
P3_COMMENT="should cause error"
=
SEQUENCE_ID=syntax06
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5 2
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21
P3_COMMENT="should cause error"
=
SEQUENCE_ID=syntax07
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21 0,1
P3_COMMENT="should succeed"
=
SEQUENCE_ID=syntax08
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21,1
P3_COMMENT="should cause error"
=
SEQUENCE_ID=syntax09
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=
P3_COMMENT="should succeed"
=
SEQUENCE_ID=syntax10
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21 3,5
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=
P3_COMMENT="should succeed (whitespace in int. oligo. excl. region)"
=
SEQUENCE_ID=syntax11
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21.0
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37,21
PRIMER_EXPLAIN_FLAG=1
P3_COMMENT=should fail with syntax error
=
SEQUENCE_ID=syntax12
SEQUENCE_TEMPLATE=GTAGTCAGTAGACNATGACNACTGACGATGCAGACNACACACACACACACAGCACACAGGTATTAGTGGGCCATTCGATCCCGACCCAAATCGATAGCTACGATGACG
SEQUENCE_TARGET=37,21
PRIMER_OPT_SIZE=18
PRIMER_MIN_SIZE=15
PRIMER_MAX_SIZE=21
PRIMER_MAX_NS_ACCEPTED=1
P3_FILE_FLAG=1
PRIMER_PICK_INTERNAL_OLIGO=1
SEQUENCE_INTERNAL_EXCLUDED_REGION=37.01,21
PRIMER_EXPLAIN_FLAG=1
P3_COMMENT=should fail with type error.
=
|