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Author: Tim Booth <tbooth@ceh.ac.uk>
Last-Update: Fri, 28 Feb 2014 16:25:41 +0000
Description: This patch allows biom to work even if there is an older
installation of the biom libs in /usr/local/...
Not sure if this is the neatest fix, but absolute_imports doesn't seem to be
the full answer here as we have one module hooking in another, and probably
looking for the default installed version is normally what you'd want.
--- biom-format-2.0.0.orig/scripts/biom
+++ biom-format-2.0.0/scripts/biom
@@ -19,4 +19,6 @@
# __maintainer__ = "Greg Caporaso"
# __email__ = "gregcaporaso@gmail.com"
+export PYTHONPATH=/usr/lib/python`python --version 2>&1 | grep -o '[1-9]\.[0-9]\+'`/dist-packages
+
exec pyqi --driver-name biom --command-config-module biom.interfaces.optparse.config -- "$@"
--- biom-format-2.0.0.orig/biom/__init__.py
+++ biom-format-2.0.0/biom/__init__.py
@@ -8,6 +8,8 @@
# The full license is in the file COPYING.txt, distributed with this software.
# ----------------------------------------------------------------------------
+from __future__ import absolute_import
+
__author__ = "Daniel McDonald"
__copyright__ = "Copyright 2011-2013, The BIOM Format Development Team"
__credits__ = ["Daniel McDonald", "Jai Ram Rideout", "Greg Caporaso",
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