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from Bio.config.FormatRegistry import FormatObject, FormatGroup
search = FormatGroup(
name = "search",
multirecord = 0,
)
blast = FormatGroup(
name = "blast",
filter = "Bio.expressions.blast.ncbiblast.blast_filter",
multirecord = 0,
)
search.add(blast)
blastp = FormatGroup(
name = "blastp",
multirecord = 0,
)
blast.add(blastp)
blastn = FormatGroup(
name = "blastn",
multirecord = 0,
)
blast.add(blastn)
blastx = FormatGroup(
name = "blastx",
multirecord = 0,
)
blast.add(blastx)
tblastn = FormatGroup(
name = "tblastn",
multirecord = 0,
)
blast.add(tblastn)
tblastx = FormatGroup(
name = "tblastx",
multirecord = 0,
)
blast.add(tblastx)
### NCBI BLASTs
ncbi_blastp = FormatObject(
name = "ncbi-blastp",
abbrev = "ncbi_blastp",
expression = "Bio.expressions.blast.ncbiblast.blastp",
filter = "Bio.expressions.blast.ncbiblast.blastp_appheader",
multirecord = 0,
)
blastp.add(ncbi_blastp)
ncbi_blastn = FormatObject(
name = "ncbi-blastn",
abbrev = "ncbi_blastn",
expression = "Bio.expressions.blast.ncbiblast.blastn",
filter = "Bio.expressions.blast.ncbiblast.blastn_appheader",
multirecord = 0,
)
blastn.add(ncbi_blastn)
ncbi_blastx = FormatObject(
name = "ncbi-blastx",
abbrev = "ncbi_blastx",
expression = "Bio.expressions.blast.ncbiblast.blastx",
filter = "Bio.expressions.blast.ncbiblast.blastx_appheader",
multirecord = 0,
)
blastx.add(ncbi_blastx)
ncbi_tblastn = FormatObject(
name = "ncbi-tblastn",
abbrev = "ncbi_tblastn",
expression = "Bio.expressions.blast.ncbiblast.tblastn",
filter = "Bio.expressions.blast.ncbiblast.tblastn_appheader",
multirecord = 0,
)
tblastn.add(ncbi_tblastn)
ncbi_tblastx = FormatObject(
name = "ncbi-tblastx",
abbrev = "ncbi_tblastx",
expression = "Bio.expressions.blast.ncbiblast.tblastx",
filter = "Bio.expressions.blast.ncbiblast.tblastx_appheader",
multirecord = 0,
)
tblastx.add(ncbi_tblastx)
### WU-BLASTs
wu_blastp = FormatObject(
name = "wu-blastp",
abbrev = "wu_blastp",
expression = "Bio.expressions.blast.wublast.blastp",
filter = "Bio.expressions.blast.wublast.blastp_appheader",
multirecord = 0,
)
blastp.add(wu_blastp)
wu_blastn = FormatObject(
name = "wu-blastn",
abbrev = "wu_blastn",
expression = "Bio.expressions.blast.wublast.blastn",
filter = "Bio.expressions.blast.wublast.blastn_appheader",
multirecord = 0,
)
blastn.add(wu_blastn)
wu_blastx = FormatObject(
name = "wu-blastx",
abbrev = "wu_blastx",
expression = "Bio.expressions.blast.wublast.blastx",
filter = "Bio.expressions.blast.wublast.blastx_appheader",
multirecord = 0,
)
blastx.add(wu_blastx)
|
