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BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|730725|sp|Q05362|SCHB_STRHA SCHB PROTEIN
(138 letters)
Database: data/swissprot
82,258 sequences; 29,652,561 total letters
Searching..................................................done
QUERY 1 MTEQQARIVAFDDVPPNRRRGGD----VRALLTPTTAGATSGFMGVAV------VR---- 46
504 1 MTEQQARIVAFDDVPPNRRRGGD----VRALLTPTTAGATSGFMGVAV------VR---- 46
10461 1 MTDQQVRIVSLGDIAPNRRRGGD----LRALLTPTTAGSTSGFMGVAI------VQ---- 46
6345 1 MDKMRPRVVDVKEIEPNRKRGGD----LRTLLTPVTVGATSGFMGLAI------MR---- 46
1128 11 TVAAAAKIAMSSVAPSHRQGGS----TRALLTPSSVGATSGFLGHIE------LA---- 55
72438 417 ------VR---- 418
588 385 ------VK---- 386
5811 383 ------VK---- 384
7036 380 ------VK---- 381
30070 833 GKLV------LG---- 838
22447 93 LGVSM------NRVDFA 103
10500 385 ------VK---- 386
49644 385 ------VK---- 386
20808 93 LGVSM------NRVDFA 103
22446 93 LGVSM------NRVDFA 103
48079 48 AKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLA---- 98
64209 31 ------VK---- 32
8178 0 ----
33663 452 AAEDQKRYERELSD----MRATPTPTTAGKKVKFLG----------E---- 484
QUERY 47 PGERISEHYHPYSEEFVYVTAGAFEV----DLDD----VPHPLRT---------GQG--- 86
504 47 PGERISEHYHPYSEEFVYVTAGAFEV----DLDD----VPHPLRT---------GQG--- 86
10461 47 PGDRIAEHYHPYSEEFVYVTEGALEV----DLDG----VPHSLGT---------GQG--- 86
6345 47 PGERISEHYHPYSEEFVYVVEGRLEV----DLDG----ETFPLRA---------DQG--- 86
1128 56 PGESVTEHYHPFSDKYLYLIEGSLVV----RVNG----EEVRLER---------DEA--- 95
72438 419 PGKMLSLHKHFHRSEHWICVKGTAEV----TIED----RVTILHE---------NQS--- 458
588 387 PGEGISEQQHYHRAEHWIIVAGTAKI----TIKG----EVKILTE---------NES--- 426
5811 385 PGARLSLQMHHHRAEHWIVVSGTAQV----TCDD----KTFLLTE---------NQS--- 424
7036 382 PGATLSLQMHHHRAEHWIVVSGTAEV----TRGD----EVLLLTE---------NQS--- 421
7422 228 GDRIVDHYHEYHTETFYCLEGQMTM----WTDG----QEIQLNP---------GDF--- 266
8765 46 HKHDIHDQIAYVAAGSFEV----VIEG----EKRILKT---------GDA--- 78
30070 839 PYEEKGKQHVGQDILVFYVNFGDLLC----TLHE----TPYKLTT---------GDS--- 878
22447 104 PGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRA---------GET--- 151
10500 387 PGEKFVAQMHHHRAEHWIVLSGTARV----TKGE----QTYMVSE---------NES--- 426
49644 387 PGGAFSMQMHHHRAEHWVILAGTGQV----TVNG----KQFLLTE---------NQS--- 426
59757 20 HHHEYPQ-IILGLMGKSEL----SIED----SSVCLSP---------GMG--- 51
20808 104 PGGTNPPHVHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRA---------GET--- 151
22446 104 PGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRA---------GET--- 151
48079 99 PGGVIPMHTHPGASEILNVVEG 120
64209 33 EGLRANWFYNPVLEEFA---------------------IPDSYQE---------GHG--- 59
8178 325 PGVIKAFHYHEKQDDLWFFPTGHAQV----VLYD----LREDSKTKGETDVYYMGEDNPM 376
33663 485 PKKAPMNGYQKFSQELL 501
QUERY 87 -LLIPKDVRHRFRNTGDVEARLV---FHLG---PLAPRPDLGHVDTEETDETAPAGVVS 138
504 87 -LLIPKDVRHRFRNTGDVEARLV---FHLG---PLAPRPDLGHVDTEETDETAPAGVVS 138
10461 87 -LLIPQDMRHRFRNAGDVEARLV---FHLG---PLAPRPELGHVDTEDAEGNA 132
6345 87 -LMIPIDMRHRFRNVGDEEARMV---FHLS---PLAPKPSLGHVDTE 126
1128 96 -LFVTRGQRHRIENRGNVPARVV---FQIS---PLAPRPELGHVDTEPVPNPAAA 143
72438 459 -IYIPEGAIHRLGNPGKIMLELVE--IQTG---AYLGEDDIIRVADESRNE 503
588 427 -VYIPVGVKHCLENPGKIALELI 448
5811 425 -TYIPIASVHRLANPGKIPLEII 446
7036 422 -TYIPLGVTHRLKNPGKLPLELI 443
7422 267 -LHVPANTVHSYR 278
8765 79 -YMAVKNEMH 87
30070 879 -FYVPSGNHYNIKNLLNVESSLL---F 901
22447 152 -FLIPRGLMHFQFNVGKTEASMV---VFFN---SQSP 181
10500 427 -TFIPPNTIHALENPGMTPLKLI 448
49644 427 -TFIPIGAEHSLENPGRI 443
59757 52 -YRINANVEHSFSGTSNNQV-LV---MNLP---PFISMTDV 84
20808 152 -FLIPRGLMHFQFNVGKTEASMV 173
22446 152 -FLIPRGLMHFQFNVGKTEASMV 173
39294 142 IRCRFRNSTRMEFRLQIWRYSMGPSPPIAPAPDLEEV---LTNITAPPG 187
39295 142 IRCRFRNSTRMEFRLQIWRYSMGPSPPIAPAPDLEEV---LTNITAPPG 187
64209 60 -VNVKITFSHRSRNTGQI 76
8178 377 LLLIPKGVAHGYRVLGETPLTII---Y 400
Database: data/swissprot
Posted date: Nov 29, 1999 4:39 PM
Number of letters in database: 29,652,561
Number of sequences in database: 82,258
Lambda K H
0.319 0.139 0.415
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8952568
Number of Sequences: 82258
Number of extensions: 387403
Number of successful extensions: 727
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 23
length of query: 138
length of database: 29,652,561
effective HSP length: 47
effective length of query: 91
effective length of database: 25,786,435
effective search space: 2346565585
effective search space used: 2346565585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 61 (28.2 bits)
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