1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
|
EXONERATE TEST DATA FILES
=========================
This directory contains various data files for testing the
Exonerate-related code in Biopython. All files are grouped by
Exonerate release version, from the most recent first.
Exonerate 2.2
-------------
exn_22_m_affine_local.exn affine:local model alignment
exn_22_m_cdna2genome.exn cdna2genome model alignment
exn_22_m_coding2coding.exn coding2coding model alignment
exn_22_m_coding2coding_fshifts.exn coding2coding model alignment, with frameshifts
exn_22_m_coding2genome.exn coding2genome model alignment
exn_22_m_dna2protein.exn dna2protein model alignment
exn_22_m_est2genome.exn est2genome model alignment
exn_22_m_genome2genome.exn genome2genome model alignment
exn_22_m_ner.exn ner model alignment
exn_22_m_protein2dna.exn protein2dna model alignment
exn_22_m_protein2dna_fshifts.exn protein2dna model alignment, with frameshifts
exn_22_m_protein2genome.exn protein2genome model alignment
exn_22_m_ungapped.exn ungapped model alignment (default)
exn_22_m_ungapped_trans.exn ungapped:translated model alignment
exn_22_o_vulgar_cigar.exn genome2genome alignment with vulgar and cigar lines only
exn_22_o_vulgar.exn genome2genome alignment with vulgar lines only
exn_22_o_vulgar_fshifts.exn coding2coding alignment with vulgar lines only, frameshifts
exn_22_o_vulgar_fshifts2.exn protein2dna alignment with vulgar lines only, frameshifts
exn_22_q_multiple.exn est2genome, multiple queries, multiple hits and hsps
exn_22_q_multiple_vulgar.exn est2genome, multiple queries, multiple hits and hsps, vulgar lines only
exn_22_q_empty.exn est2genome, single query, no results
|
