1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
|
BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|120291|sp|P21297|FLBT_CAUCR FLBT PROTEIN
(141 letters)
Database: data/swissprot
82,258 sequences; 29,652,561 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|120291|sp|P21297|FLBT_CAUCR FLBT PROTEIN 284 7e-77
gi|3024946|sp|Q58368|Y958_METJA HYPOTHETICAL PROTEIN MJ0958 PRE... 29 3.4
gi|3024745|sp|O26320|THSA_METTH PROBABLE THERMOSOME SUBUNIT A 29 4.5
>gi|120291|sp|P21297|FLBT_CAUCR FLBT PROTEIN
Length = 141
Score = 284 bits (718), Expect = 7e-77
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MPLKLSLKPGEKFVLNGAVVQNGDRRGVLVLQNKASVLREKDIMQPDQVTTPARHIYFPV 60
MPLKLSLKPGEKFVLNGAVVQNGDRRGVLVLQNKASVLREKDIMQPDQVTTPARHIYFPV
Sbjct: 1 MPLKLSLKPGEKFVLNGAVVQNGDRRGVLVLQNKASVLREKDIMQPDQVTTPARHIYFPV 60
Query: 61 MMMYLDEVGAEKFYEEFATRLNEFMGVVRNPVVLQDCIAISKHVMAREYYKALMLSRKLI 120
MMMYLDEVGAEKFYEEFATRLNEFMGVVRNPVVLQDCIAISKHVMAREYYKALMLSRKLI
Sbjct: 61 MMMYLDEVGAEKFYEEFATRLNEFMGVVRNPVVLQDCIAISKHVMAREYYKALMLSRKLI 120
Query: 121 EYEDERLGHVSSGVSAGGDAG 141
EYEDERLGHVSSGVSAGGDAG
Sbjct: 121 EYEDERLGHVSSGVSAGGDAG 141
>gi|3024946|sp|Q58368|Y958_METJA HYPOTHETICAL PROTEIN MJ0958
PRECURSOR
Length = 426
Score = 29.3 bits (64), Expect = 3.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 28 VLVLQNKASVLREKDIMQPDQVTTPARHIYFPVMMMYLDEVGAEKFY 74
+LVL N ++ K D TT +IY P+ + + A+KFY
Sbjct: 169 ILVLINNTNITELKKFEDDDYYTTFQHYIYQPIFIFTTYDSKAKKFY 215
>gi|3024745|sp|O26320|THSA_METTH PROBABLE THERMOSOME SUBUNIT A
Length = 542
Score = 29.0 bits (63), Expect = 4.5
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 34 KASVLREKDIMQPDQVTTPARHIYFPVMMMYLDEVGAEKFYEEFATRLNEFMGVVRNPVV 93
+A V+ EK I D+V T P + + + EE L + +GVV +
Sbjct: 339 EAGVIYEKKIF--DEVLTFIEECRDPKAISIILRGSTKHVAEEMERALEDAIGVVAS--T 394
Query: 94 LQDCIAISKHVMAREYYKALMLSRKLIEYEDERLGHVSSGVSAGGDA 140
L+D + V+A + ++RKL EY D G VSA DA
Sbjct: 395 LED-----REVVAGGGAPEVEIARKLREYADTISGREQLAVSAFADA 436
Database: data/swissprot
Posted date: Nov 15, 1999 2:55 PM
Number of letters in database: 29,652,561
Number of sequences in database: 82,258
Lambda K H
0.321 0.138 0.390
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7927717
Number of Sequences: 82258
Number of extensions: 284596
Number of successful extensions: 567
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 3
length of query: 141
length of database: 29,652,561
effective HSP length: 50
effective length of query: 91
effective length of database: 25,539,661
effective search space: 2324109151
effective search space used: 2324109151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 61 (28.2 bits)
|
