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BLAST TEST DATA FILES
=====================
This directory contains various data files for testing the
BLAST-related code in Biopython. All files are grouped by BLAST
release version, from the most recent first.
BLAST+ 2.2.30
-------------
text_2230_blastp_001 single query, match with full line of dashes
BLAST 2.2.28+
-------------
tab_2228_tblastn_001 single query, custom columns: evalue sallseqid qseqid, commented
tab_2228_tblastx_001 single query with all columns (including new ones added in this version), commented
BLAST 2.2.26+
-------------
tab_2226_tblastn_001 multiple queries
tab_2226_tblastn_002 single query, no hits
tab_2226_tblastn_003 single query, hits @ single hsp
tab_2226_tblastn_004 single query, multiple hsps per hit present
tab_2226_tblastn_005 multiple queries, commented
tab_2226_tblastn_006 single query, no hits, commented
tab_2226_tblastn_007 single query, hits @ single hsp, commented
tab_2226_tblastn_008 single query, multiple hsps per hit present, commented
tab_2226_tblastn_009 multiple queries with custom columns
tab_2226_tblastn_010 multiple queries with custom columns, commented
tab_2226_tblastn_011 multiple queries with all columns, commented
tab_2226_tblastn_012 multiple quries, remote search, standard columns, commented
tab_2226_tblastn_013 single query, custom columns: qsseq std sseq
text_2226_blastn_001 single query, no hits
text_2226_blastn_002 single query, hits @ single hsp
text_2226_blastn_003 single query, multiple hsps per hit present
text_2226_blastn_004 multiple queries
text_2226_blastp_001 single query, no hits
text_2226_blastp_002 single query, hits @ single hsp
text_2226_blastp_003 single query, multiple hsps per hit present
text_2226_blastp_004 multiple queries
text_2226_blastx_001 single query, no hits
text_2226_blastx_002 single query, hits @ single hsp
text_2226_blastx_003 single query, multiple hsps per hit present
text_2226_blastx_004 multiple queries
text_2226_tblastn_001 single query, no hits
text_2226_tblastn_002 single query, hits @ single hsp
text_2226_tblastn_003 single query, multiple hsps per hit present
text_2226_tblastn_004 multiple queries
text_2226_tblastx_001 single query, no hits
text_2226_tblastx_002 single query, hits @ single hsp
text_2226_tblastx_003 single query, multiple hsps per hit present
text_2226_tblastx_004 multiple queries
xml_2226_blastn_001.xml multiple queries
xml_2226_blastn_002.xml single query, no hits
xml_2226_blastn_003.xml single query, hits @ single hsp
xml_2226_blastn_004.xml single query, multiple hsps per hit present
xml_2226_blastn_005.xml multiple queries, remote search on NCBI's database
xml_2226_blastn_006.xml single query, against a database with duplicate entries
xml_2226_blastp_001.xml multiple queries
xml_2226_blastp_002.xml single query, no hits
xml_2226_blastp_003.xml single query, hits @ single hsp
xml_2226_blastp_004.xml single query, multiple hsps per hit present
xml_2226_blastp_005.xml multiple queries, remote search on NCBI's database
xml_2226_blastx_001.xml multiple queries
xml_2226_blastx_002.xml single query, no hits
xml_2226_blastx_003.xml single query, multiple hsps per hit present
xml_2226_blastx_004.xml multiple queries, remote search on NCBI's database
xml_2226_tblastn_001.xml multiple queries
xml_2226_tblastn_002.xml single query, no hits
xml_2226_tblastn_003.xml single query, hits @ single hsp
xml_2226_tblastn_004.xml single query, multiple hsps per hit present
xml_2226_tblastn_005.xml multiple queries, remote search on NCBI's database
xml_2226_tblastx_001.xml multiple queries
xml_2226_tblastx_002.xml single query, no hits
xml_2226_tblastx_003.xml single query, multiple hsps per hit present
xml_2226_tblastx_004.xml multiple queries, remote search on NCBI's database
BLAST 2.2.22+
-------------
text_2222_blastx_001.txt multiple queries
xml_2222_blastp_001.xml n/a
xml_2222_blastx_001.xml compare with text_2222_blastx_001.txt
BLAST 2.2.22 (Legacy)
---------------------
text_2222L_blastx_001.txt multiple queries
BLAST 2.2.21 (Legacy)
---------------------
text_2221L_blastp_001.txt multiple queries
BLAST 2.2.20 (Legacy)
---------------------
text_2220L_blastx_001.txt multiple hits @ single hsp
text_2220L_blastx_002.txt multiple queries, most with no hits
BLAST 2.2.18+
-------------
xml_2218_blastp_001.xml n/a
xml_2218_blastp_002.xml n/a
BLAST 2.2.18 (Legacy)
---------------------
xml_2218L_blastp_001.xml n/a
xml_2218L_rpsblast_001.xml n/a
BLAST 2.2.16 (Legacy)
---------------------
text_2216L_tblastn_001.txt multiple hits, multiple hsps per hit present
BLAST 2.2.15 (Legacy)
---------------------
text_2215L_blastx_001.txt no hits, single query
BLAST 2.2.12 (Legacy)
---------------------
xml_2212L_blastn_001.xml n/a
xml_2212L_blastp_001.xml n/a
xml_2212L_blastx_001.xml n/a
xml_2212L_tblastn_001.xml n/a
xml_2212L_tblastx_001.xml n/a
BLAST 2.2.8 (Legacy)
--------------------
text_2208L_psiblast_001.txt no 'Searching...' lines
BLAST 2.2.2 (Legacy)
--------------------
text_2202L_blastn_001.txt no hits, with errors
text_2202L_blastn_002.txt no hits
text_2202L_blastp_001.txt n/a
BLAST 2.2.1 (Legacy)
--------------------
text_2201L_blastx_001.txt No 'length of query'
BLAST 2.1.2 (Legacy)
--------------------
text_2102L_blastn_001.txt no hits
BLAST 2.0.14 (Legacy)
---------------------
text_2014L_blastn_001.txt multiple hits @ single hsp
text_2014L_psiblast_001.txt no model sequences found (from Mike Poidinger)
BLAST 2.0.12 (Legacy)
---------------------
text_2012L_psiblast_001.txt multiple db (from Mike Poidinger)
BLAST 2.0.11 (Legacy)
---------------------
text_2011L_blastp_001.txt multiple hits @ single hsp
text_2011L_blastp_002.txt no hits
text_2011L_blastp_003.txt multiple hits, multiple hsps per hit present
text_2011L_blastp_004.txt no descriptions
text_2011L_blastp_005.txt hit table only
text_2011L_blastp_006.txt master-slave
text_2011L_blastp_007.txt master-slave, no descriptions
text_2011L_phiblast_001.txt converged in 2 rounds
text_2011L_phiblast_002.txt no new sequences before 'CONVERGED!' message
text_2011L_phiblast_003.txt master-slave
text_2011L_blastn_001.txt multiple hits @ single hsp
text_2011L_blastn_002.txt hit table only
text_2011L_blastn_003.txt no descriptions
text_2011L_blastn_004.txt master-slave
text_2011L_blastx_001.txt multiple hits @ single hsp
text_2011L_blastx_002.txt no hits
text_2011L_tblastn_001.txt multiple hits @ single hsp
text_2011L_tblastn_002.txt no hits
text_2011L_tblastx_001.txt multiple hits @ multiple hsps
BLAST 2.0.10 (Legacy)
---------------------
text_2010L_blastp_001.txt multiple hits @ single hsp
text_2010L_blastp_002.txt no hits
text_2010L_blastp_003.txt multiple hits, multiple hsps per hit present
text_2010L_blastp_004.txt no descriptions
text_2010L_blastp_005.txt hit table only
text_2010L_blastp_006.txt master-slave
text_2010L_blastp_007.txt master-slave, no descriptions
text_2010L_phiblast_001.txt converged in 1 round
text_2010L_phiblast_002.txt converged in 3 rounds
text_2010L_phiblast_003.txt no new sequences before 'CONVERGED!' message
text_2010L_blastn_001.txt multiple hits @ single hsp
text_2010L_blastn_002.txt no hits
text_2010L_blastn_003.txt multiple hits @ single hsp, no hit table
text_2010L_blastn_004.txt master-slave
text_2010L_blastx_001.txt multiple hits @ single hsp
text_2010L_blastx_002.txt no hits
text_2010L_tblastn_001.txt multiple hits @ single hsp
text_2010L_tblastn_002.txt no hits
text_2010L_tblastx_001.txt multiple hits @ multiple hsps
|
