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BLASTN 2.2.26+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: NCBI Transcript Reference Sequences
2,903,055 sequences; 4,626,651,242 total letters
Query= hg19_dna range=chr1:1207307-1207372 5'pad=0 3'pad=0 strand=+
repeatMasking=none
Length=66
Score E
Sequences producing significant alignments: (Bits) Value
ref|XM_003267724.1| PREDICTED: Nomascus leucogenys ATG14 autopha... 115 3e-24
ref|NM_001040441.1| Homo sapiens zinc finger and BTB domain cont... 115 3e-24
ref|XM_003318468.1| PREDICTED: Pan troglodytes zinc finger prote... 111 4e-23
ref|XM_527768.3| PREDICTED: Pan troglodytes zinc finger protein ... 111 4e-23
ref|XM_003276378.1| PREDICTED: Nomascus leucogenys S100P binding... 111 4e-23
ref|XM_003276377.1| PREDICTED: Nomascus leucogenys S100P binding... 111 4e-23
ref|XM_001082839.2| PREDICTED: Macaca mulatta transmembrane prot... 111 4e-23
ref|NM_001132567.1| Pongo abelii zinc finger protein 665 (ZNF665... 111 4e-23
ref|XM_003311344.1| PREDICTED: Pan troglodytes hypothetical prot... 110 1e-22
ref|XM_516695.3| PREDICTED: Pan troglodytes poly (ADP-ribose) po... 110 1e-22
ref|XM_003268225.1| PREDICTED: Nomascus leucogenys ankyrin repea... 110 1e-22
ref|XM_003268224.1| PREDICTED: Nomascus leucogenys ankyrin repea... 110 1e-22
ref|XR_121161.1| PREDICTED: Nomascus leucogenys zinc/RING finger... 110 1e-22
ref|XM_002812147.1| PREDICTED: Pongo abelii spastin-like (LOC100... 110 1e-22
ref|XM_002805124.1| PREDICTED: Macaca mulatta putative uncharact... 110 1e-22
ref|NM_173511.3| Homo sapiens family with sequence similarity 11... 110 1e-22
ref|XM_515388.2| PREDICTED: Pan troglodytes spastin, transcript ... 110 1e-22
ref|XM_001164367.1| PREDICTED: Pan troglodytes spastin, transcri... 110 1e-22
ref|XM_003315843.1| PREDICTED: Pan troglodytes desmocollin 1, tr... 108 5e-22
ref|XM_518630.3| PREDICTED: Pan troglodytes arginyl-tRNA synthet... 108 5e-22
>ref|XM_003267724.1| PREDICTED: Nomascus leucogenys ATG14 autophagy related 14 homolog
(S. cerevisiae) (ATG14), mRNA
Length=4771
Score = 115 bits (62), Expect = 3e-24
Identities = 62/62 (100%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 5 GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaaaaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2865 GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAA 2924
Query 65 aa 66
||
Sbjct 2925 AA 2926
>ref|NM_001040441.1| Homo sapiens zinc finger and BTB domain containing 8A (ZBTB8A),
mRNA
Length=7333
Score = 115 bits (62), Expect = 3e-24
Identities = 62/62 (100%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 5 GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaaaaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3677 GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAA 3736
Query 65 aa 66
||
Sbjct 3737 AA 3738
Score = 99.0 bits (53), Expect = 3e-19
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 6 CCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaa 58
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2824 CCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAA 2876
>ref|XM_003318468.1| PREDICTED: Pan troglodytes zinc finger protein 273, transcript
variant 1 (ZNF273), mRNA
Length=4430
Score = 111 bits (60), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 1 TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa 60
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2800 TCACGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAA 2741
Query 61 aaaaaa 66
||||||
Sbjct 2740 AAAAAA 2735
>ref|XM_527768.3| PREDICTED: Pan troglodytes zinc finger protein 273, transcript
variant 2 (ZNF273), mRNA
Length=4335
Score = 111 bits (60), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 1 TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa 60
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2705 TCACGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAA 2646
Query 61 aaaaaa 66
||||||
Sbjct 2645 AAAAAA 2640
>ref|XM_003276378.1| PREDICTED: Nomascus leucogenys S100P binding protein, transcript
variant 2 (S100PBP), mRNA
Length=4345
Score = 111 bits (60), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 1 TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa 60
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2857 TCATGCCACTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAA 2798
Query 61 aaaaaa 66
||||||
Sbjct 2797 AAAAAA 2792
>ref|XM_003276377.1| PREDICTED: Nomascus leucogenys S100P binding protein, transcript
variant 1 (S100PBP), mRNA
Length=4359
Score = 111 bits (60), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 1 TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa 60
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2871 TCATGCCACTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAA 2812
Query 61 aaaaaa 66
||||||
Sbjct 2811 AAAAAA 2806
>ref|XM_001082839.2| PREDICTED: Macaca mulatta transmembrane protein 150B-like (LOC694136),
mRNA
Length=3419
Score = 111 bits (60), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 1 TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2716 TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCATCTCAAAAAAAAAAAA 2775
Query 61 aaaaaa 66
|||||
Sbjct 2776 GAAAAA 2781
>ref|NM_001132567.1| Pongo abelii zinc finger protein 665 (ZNF665), mRNA
emb|CR859627.1| Pongo abelii mRNA; cDNA DKFZp459D1134 (from clone DKFZp459D1134)
Length=2274
Score = 111 bits (60), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 1 TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa 60
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2209 TCATGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAA 2268
Query 61 aaaaaa 66
||||||
Sbjct 2269 AAAAAA 2274
>ref|XM_003311344.1| PREDICTED: Pan troglodytes hypothetical protein LOC100608148
(LOC100608148), mRNA
Length=7609
Score = 110 bits (59), Expect = 1e-22
Identities = 61/62 (98%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 5 GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaaaaaa 64
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 6139 GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCTGTCTCAAAAAAAAAAAAAAAA 6080
Query 65 aa 66
||
Sbjct 6079 AA 6078
>ref|XM_516695.3| PREDICTED: Pan troglodytes poly (ADP-ribose) polymerase family,
member 14 (PARP14), mRNA
Length=7914
Score = 110 bits (59), Expect = 1e-22
Identities = 61/62 (98%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 5 GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaaaaaa 64
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 6571 GCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAAAAAA 6512
Query 65 aa 66
||
Sbjct 6511 AA 6510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 177382481523
Database: NCBI Transcript Reference Sequences
Posted date: Mar 1, 2012 8:32 PM
Number of letters in database: 4,626,651,242
Number of sequences in database: 2,903,055
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5
|
