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TBLASTX 2.2.26+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: NCBI Transcript Reference Sequences
2,903,055 sequences; 4,626,651,242 total letters
Query= gi|356995852:1-490 Mus musculus POU domain, class 5, transcription
factor 1 (Pou5f1), transcript variant 1, mRNA
Length=490
Score E
Sequences producing significant alignments: (Bits) Value N
ref|NM_013633.3| Mus musculus POU domain, class 5, transcription... 418 2e-115 1
ref|XR_141831.1| PREDICTED: Mus musculus predicted gene, 19553 (... 415 3e-114 1
ref|XR_107064.1| PREDICTED: Mus musculus hypothetical LOC1005051... 403 8e-111 1
ref|XR_105908.1| PREDICTED: Mus musculus hypothetical LOC1005051... 403 8e-111 1
ref|NM_001009178.2| Rattus norvegicus POU class 5 homeobox 1 (Po... 349 2e-94 1
ref|XM_528230.3| PREDICTED: Pan troglodytes POU class 5 homeobox... 126 2e-27 1
ref|XR_021762.2| PREDICTED: Pan troglodytes POU domain, class 5,... 125 4e-27 1
ref|NR_034180.1| Homo sapiens POU class 5 homeobox 1 pseudogene ... 125 4e-27 1
ref|XM_002752481.1| PREDICTED: Callithrix jacchus POU domain, cl... 125 5e-27 1
ref|XM_002746317.1| PREDICTED: Callithrix jacchus POU domain, cl... 125 5e-27 1
ref|XM_001135162.2| PREDICTED: Pan troglodytes POU class 5 homeo... 124 1e-26 1
ref|NM_001114955.1| Macaca mulatta POU class 5 homeobox 1 (POU5F... 124 1e-26 1
ref|NR_033594.1| Mus musculus predicted gene 5712 (Gm5712), non-... 124 1e-26 1
ref|NM_001252041.1| Pan troglodytes POU class 5 homeobox 1 (POU5... 124 1e-26 1
ref|XR_024993.2| PREDICTED: Pan troglodytes POU domain, class 5,... 124 1e-26 1
ref|NM_002701.4| Homo sapiens POU class 5 homeobox 1 (POU5F1), t... 124 1e-26 1
ref|XM_002809098.1| PREDICTED: Pongo abelii POU domain, class 5,... 122 5e-26 1
ref|XM_003505863.1| PREDICTED: Cricetulus griseus POU domain, cl... 121 1e-25 1
ref|NM_001173441.1| Felis catus POU class 5 homeobox 1 (POU5F1),... 120 1e-25 1
ref|NR_036440.1| Homo sapiens POU class 5 homeobox 1 pseudogene ... 120 2e-25 1
>ref|NM_013633.3| Mus musculus POU domain, class 5, transcription factor 1 (Pou5f1),
transcript variant 1, mRNA
Length=1353
Score = 418 bits (908), Expect = 2e-115
Identities = 163/163 (100%), Positives = 163/163 (100%), Gaps = 0/163 (0%)
Frame = +1/+1
Query 1 EVKPSLGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*AS 180
EVKPSLGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*AS
Sbjct 1 EVKPSLGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*AS 180
Query 181 KGLQVGLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHE 360
KGLQVGLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHE
Sbjct 181 KGLQVGLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHE 360
Query 361 WKATQREPPLSPVPTAPMP*SWRRWNQLPRSPRT*KPCRRS*N 489
WKATQREPPLSPVPTAPMP*SWRRWNQLPRSPRT*KPCRRS*N
Sbjct 361 WKATQREPPLSPVPTAPMP*SWRRWNQLPRSPRT*KPCRRS*N 489
>ref|XR_141831.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA
ref|XR_105837.2| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA
ref|XR_141464.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA
ref|XR_141446.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA
Length=570
Score = 415 bits (900), Expect = 3e-114
Identities = 162/163 (99%), Positives = 162/163 (99%), Gaps = 0/163 (0%)
Frame = +1/-1
Query 1 EVKPSLGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*AS 180
EVKPSLGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*AS
Sbjct 570 EVKPSLGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*AS 391
Query 181 KGLQVGLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHE 360
KGLQVGLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHE
Sbjct 390 KGLQVGLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHE 211
Query 361 WKATQREPPLSPVPTAPMP*SWRRWNQLPRSPRT*KPCRRS*N 489
WKATQREPPLSPVPTAPMP*SWRRWNQL RSPRT*KPCRRS*N
Sbjct 210 WKATQREPPLSPVPTAPMP*SWRRWNQLQRSPRT*KPCRRS*N 82
>ref|XR_107064.1| PREDICTED: Mus musculus hypothetical LOC100505104 (LOC100505104),
partial miscRNA
Length=505
Score = 403 bits (875), Expect = 8e-111
Identities = 157/158 (99%), Positives = 157/158 (99%), Gaps = 0/158 (0%)
Frame = +1/-1
Query 16 LGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*ASKGLQV 195
LGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*ASKGLQV
Sbjct 505 LGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*ASKGLQV 326
Query 196 GLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHEWKATQ 375
GLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHEWKATQ
Sbjct 325 GLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHEWKATQ 146
Query 376 REPPLSPVPTAPMP*SWRRWNQLPRSPRT*KPCRRS*N 489
REPPLSPVPTAPMP*SWRRWNQL RSPRT*KPCRRS*N
Sbjct 145 REPPLSPVPTAPMP*SWRRWNQLQRSPRT*KPCRRS*N 32
>ref|XR_105908.1| PREDICTED: Mus musculus hypothetical LOC100505104 (LOC100505104),
partial miscRNA
Length=505
Score = 403 bits (875), Expect = 8e-111
Identities = 157/158 (99%), Positives = 157/158 (99%), Gaps = 0/158 (0%)
Frame = +1/-1
Query 16 LGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*ASKGLQV 195
LGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*ASKGLQV
Sbjct 505 LGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*ASKGLQV 326
Query 196 GLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHEWKATQ 375
GLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHEWKATQ
Sbjct 325 GLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHEWKATQ 146
Query 376 REPPLSPVPTAPMP*SWRRWNQLPRSPRT*KPCRRS*N 489
REPPLSPVPTAPMP*SWRRWNQL RSPRT*KPCRRS*N
Sbjct 145 REPPLSPVPTAPMP*SWRRWNQLQRSPRT*KPCRRS*N 32
>ref|NM_001009178.2| Rattus norvegicus POU class 5 homeobox 1 (Pou5f1), mRNA
gb|BC158566.1| Rattus norvegicus POU class 5 homeobox 1, mRNA (cDNA clone MGC:187285
IMAGE:9092936), complete cds
Length=1388
Score = 349 bits (757), Expect = 2e-94
Identities = 138/161 (86%), Positives = 143/161 (89%), Gaps = 0/161 (0%)
Frame = +1/+1
Query 7 KPSLGEPSFHQAPGSGCPPSPWLDTWLQTSPSHPHQVGVMGQQGWSRAGWILEPG*ASKG 186
K SLGE SFHQAPGSG PPSPWLDTWLQTSPSHPH VGVMGQQGWSRAGW LEPG*AS+G
Sbjct 19 KQSLGESSFHQAPGSGSPPSPWLDTWLQTSPSHPHLVGVMGQQGWSRAGWTLEPG*ASRG 198
Query 187 LQVGLESDQAQRYWGSPHVRPHTSSAEGWHTVDLRLDWA*SPKLAWRLCSLRARQEHEWK 366
LQVGLESDQ QR WGSP V HTSS EGWHTVDLRLDWA*SPKLAWRLCS RARQEHEW+
Sbjct 199 LQVGLESDQVQRCWGSPRVPQHTSSVEGWHTVDLRLDWA*SPKLAWRLCSPRARQEHEWR 378
Query 367 ATQREPPLSPVPTAPMP*SWRRWNQLPRSPRT*KPCRRS*N 489
AT+REPPL PV AP P*SWRRWN +PRSPR *KPCRRS*+
Sbjct 379 ATRREPPLGPVLPAPAP*SWRRWNLVPRSPRI*KPCRRS*S 501
>ref|XM_528230.3| PREDICTED: Pan troglodytes POU class 5 homeobox 1B (POU5F1B),
mRNA
Length=1601
Score = 126 bits (274), Expect = 2e-27
Identities = 53/73 (73%), Positives = 59/73 (81%), Gaps = 0/73 (0%)
Frame = -1/-2
Query 433 TFSNFTALGRSAQGSEEVPSELLSTRAPAWPSGCKVSTPTWGTRPSPT*GPQYAIPPQNS 254
+FS+FTA G + QGS E PSELLST PA PSG +VS P WGT P+PT*GPQYAIPPQNS
Sbjct 640 SFSSFTAPGGTVQGSGEAPSELLSTPTPASPSG*EVSKPPWGTSPAPT*GPQYAIPPQNS 461
Query 253 YAGGHGEIPNTSE 215
Y GGHG IP+TSE
Sbjct 460 YGGGHGGIPHTSE 422
>ref|XR_021762.2| PREDICTED: Pan troglodytes POU domain, class 5, transcription
factor 1-like (LOC741863), miscRNA
Length=1218
Score = 125 bits (272), Expect = 4e-27
Identities = 53/73 (73%), Positives = 60/73 (82%), Gaps = 0/73 (0%)
Frame = -1/-2
Query 433 TFSNFTALGRSAQGSEEVPSELLSTRAPAWPSGCKVSTPTWGTRPSPT*GPQYAIPPQNS 254
+FS+FTA G + QGS EVPSELLST PA PSG +VS P WGT +PT*GPQYAIPPQNS
Sbjct 380 SFSSFTAPGGTVQGSREVPSELLSTLTPASPSG*EVSKPPWGTSRTPT*GPQYAIPPQNS 201
Query 253 YAGGHGEIPNTSE 215
Y+GGHG IP+TSE
Sbjct 200 YSGGHGGIPHTSE 162
>ref|NR_034180.1| Homo sapiens POU class 5 homeobox 1 pseudogene 4 (POU5F1P4),
non-coding RNA
Length=1083
Score = 125 bits (272), Expect = 4e-27
Identities = 53/73 (73%), Positives = 60/73 (82%), Gaps = 0/73 (0%)
Frame = -1/-1
Query 433 TFSNFTALGRSAQGSEEVPSELLSTRAPAWPSGCKVSTPTWGTRPSPT*GPQYAIPPQNS 254
+FS+FTA G + QGS EVPSELLST PA PSG +VS P WGT +PT*GPQYAIPPQNS
Sbjct 381 SFSSFTAPGGTVQGSREVPSELLSTLTPASPSG*EVSKPPWGTSRTPT*GPQYAIPPQNS 202
Query 253 YAGGHGEIPNTSE 215
Y+GGHG IP+TSE
Sbjct 201 YSGGHGGIPHTSE 163
>ref|XM_002752481.1| PREDICTED: Callithrix jacchus POU domain, class 5, transcription
factor 1-like (LOC100389924), mRNA
Length=1368
Score = 125 bits (271), Expect = 5e-27
Identities = 53/72 (74%), Positives = 58/72 (81%), Gaps = 0/72 (0%)
Frame = -1/-2
Query 433 TFSNFTALGRSAQGSEEVPSELLSTRAPAWPSGCKVSTPTWGTRPSPT*GPQYAIPPQNS 254
+FS+FTA G QGS E PSELLST APA PSG +VS P WGT P+PT*GPQYAIPPQNS
Sbjct 416 SFSSFTAPGGMVQGSGEAPSELLSTPAPASPSG*EVSKPPWGTSPTPT*GPQYAIPPQNS 237
Query 253 YAGGHGEIPNTS 218
Y GGHG IP+TS
Sbjct 236 YGGGHGGIPHTS 201
>ref|XM_002746317.1| PREDICTED: Callithrix jacchus POU domain, class 5, transcription
factor 1-like (LOC100384946), mRNA
Length=1417
Score = 125 bits (271), Expect = 5e-27
Identities = 53/72 (74%), Positives = 58/72 (81%), Gaps = 0/72 (0%)
Frame = -1/-1
Query 433 TFSNFTALGRSAQGSEEVPSELLSTRAPAWPSGCKVSTPTWGTRPSPT*GPQYAIPPQNS 254
+FS+FTA G QGS E PSELLST APA PSG +VS P WGT P+PT*GPQYAIPPQNS
Sbjct 466 SFSSFTAPGGMVQGSGEAPSELLSTPAPASPSG*EVSKPPWGTSPTPT*GPQYAIPPQNS 287
Query 253 YAGGHGEIPNTS 218
Y GGHG IP+TS
Sbjct 286 YGGGHGGIPHTS 251
Lambda K H
0.318 0.134 0.401
Effective search space used: 149315297940
Database: NCBI Transcript Reference Sequences
Posted date: Mar 1, 2012 8:32 PM
Number of letters in database: 4,626,651,242
Number of sequences in database: 2,903,055
Matrix: BLOSUM62
Neighboring words threshold: 13
Window for multiple hits: 40
|
