File: xml_2226_blastn_004.xml

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<?xml version="1.0"?>
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
<BlastOutput>
  <BlastOutput_program>blastn</BlastOutput_program>
  <BlastOutput_version>BLASTN 2.2.26+</BlastOutput_version>
  <BlastOutput_reference>Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), &quot;A greedy algorithm for aligning DNA sequences&quot;, J Comput Biol 2000; 7(1-2):203-14.</BlastOutput_reference>
  <BlastOutput_db>db/minirefseq_mrna</BlastOutput_db>
  <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
  <BlastOutput_query-def>hg19_dna range=chr1:1207307-1207372 5&apos;pad=0 3&apos;pad=0 strand=+ repeatMasking=none</BlastOutput_query-def>
  <BlastOutput_query-len>66</BlastOutput_query-len>
  <BlastOutput_param>
    <Parameters>
      <Parameters_expect>10</Parameters_expect>
      <Parameters_sc-match>1</Parameters_sc-match>
      <Parameters_sc-mismatch>-2</Parameters_sc-mismatch>
      <Parameters_gap-open>0</Parameters_gap-open>
      <Parameters_gap-extend>0</Parameters_gap-extend>
      <Parameters_filter>L;m;</Parameters_filter>
    </Parameters>
  </BlastOutput_param>
  <BlastOutput_iterations>
    <Iteration>
      <Iteration_iter-num>1</Iteration_iter-num>
      <Iteration_query-ID>Query_1</Iteration_query-ID>
      <Iteration_query-def>hg19_dna range=chr1:1207307-1207372 5&apos;pad=0 3&apos;pad=0 strand=+ repeatMasking=none</Iteration_query-def>
      <Iteration_query-len>66</Iteration_query-len>
      <Iteration_hits>
        <Hit>
          <Hit_num>1</Hit_num>
          <Hit_id>gnl|BL_ORD_ID|6</Hit_id>
          <Hit_def>gi|94721341|ref|NM_001040441.1| Homo sapiens zinc finger and BTB domain containing 8A (ZBTB8A), mRNA</Hit_def>
          <Hit_accession>6</Hit_accession>
          <Hit_len>7333</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>115.613</Hsp_bit-score>
              <Hsp_score>62</Hsp_score>
              <Hsp_evalue>5.52066e-29</Hsp_evalue>
              <Hsp_query-from>5</Hsp_query-from>
              <Hsp_query-to>66</Hsp_query-to>
              <Hsp_hit-from>3677</Hsp_hit-from>
              <Hsp_hit-to>3738</Hsp_hit-to>
              <Hsp_query-frame>1</Hsp_query-frame>
              <Hsp_hit-frame>1</Hsp_hit-frame>
              <Hsp_identity>62</Hsp_identity>
              <Hsp_positive>62</Hsp_positive>
              <Hsp_gaps>0</Hsp_gaps>
              <Hsp_align-len>62</Hsp_align-len>
              <Hsp_qseq>GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA</Hsp_qseq>
              <Hsp_hseq>GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA</Hsp_hseq>
              <Hsp_midline>||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
            </Hsp>
            <Hsp>
              <Hsp_num>2</Hsp_num>
              <Hsp_bit-score>98.9927</Hsp_bit-score>
              <Hsp_score>53</Hsp_score>
              <Hsp_evalue>5.55986e-24</Hsp_evalue>
              <Hsp_query-from>6</Hsp_query-from>
              <Hsp_query-to>58</Hsp_query-to>
              <Hsp_hit-from>2824</Hsp_hit-from>
              <Hsp_hit-to>2876</Hsp_hit-to>
              <Hsp_query-frame>1</Hsp_query-frame>
              <Hsp_hit-frame>1</Hsp_hit-frame>
              <Hsp_identity>53</Hsp_identity>
              <Hsp_positive>53</Hsp_positive>
              <Hsp_gaps>0</Hsp_gaps>
              <Hsp_align-len>53</Hsp_align-len>
              <Hsp_qseq>CCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAA</Hsp_qseq>
              <Hsp_hseq>CCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAA</Hsp_hseq>
              <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
        <Hit>
          <Hit_num>2</Hit_num>
          <Hit_id>gnl|BL_ORD_ID|5</Hit_id>
          <Hit_def>gi|332237160|ref|XM_003267724.1| PREDICTED: Nomascus leucogenys ATG14 autophagy related 14 homolog (S. cerevisiae) (ATG14), mRNA</Hit_def>
          <Hit_accession>5</Hit_accession>
          <Hit_len>4771</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>115.613</Hsp_bit-score>
              <Hsp_score>62</Hsp_score>
              <Hsp_evalue>5.52066e-29</Hsp_evalue>
              <Hsp_query-from>5</Hsp_query-from>
              <Hsp_query-to>66</Hsp_query-to>
              <Hsp_hit-from>2865</Hsp_hit-from>
              <Hsp_hit-to>2926</Hsp_hit-to>
              <Hsp_query-frame>1</Hsp_query-frame>
              <Hsp_hit-frame>1</Hsp_hit-frame>
              <Hsp_identity>62</Hsp_identity>
              <Hsp_positive>62</Hsp_positive>
              <Hsp_gaps>0</Hsp_gaps>
              <Hsp_align-len>62</Hsp_align-len>
              <Hsp_qseq>GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA</Hsp_qseq>
              <Hsp_hseq>GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA</Hsp_hseq>
              <Hsp_midline>||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
        <Hit>
          <Hit_num>3</Hit_num>
          <Hit_id>gnl|BL_ORD_ID|9</Hit_id>
          <Hit_def>gi|332254616|ref|XM_003276378.1| PREDICTED: Nomascus leucogenys S100P binding protein, transcript variant 2 (S100PBP), mRNA</Hit_def>
          <Hit_accession>9</Hit_accession>
          <Hit_len>4345</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>111.919</Hsp_bit-score>
              <Hsp_score>60</Hsp_score>
              <Hsp_evalue>7.14143e-28</Hsp_evalue>
              <Hsp_query-from>1</Hsp_query-from>
              <Hsp_query-to>66</Hsp_query-to>
              <Hsp_hit-from>2857</Hsp_hit-from>
              <Hsp_hit-to>2792</Hsp_hit-to>
              <Hsp_query-frame>1</Hsp_query-frame>
              <Hsp_hit-frame>-1</Hsp_hit-frame>
              <Hsp_identity>64</Hsp_identity>
              <Hsp_positive>64</Hsp_positive>
              <Hsp_gaps>0</Hsp_gaps>
              <Hsp_align-len>66</Hsp_align-len>
              <Hsp_qseq>TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA</Hsp_qseq>
              <Hsp_hseq>TCATGCCACTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA</Hsp_hseq>
              <Hsp_midline>||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
        <Hit>
          <Hit_num>4</Hit_num>
          <Hit_id>gnl|BL_ORD_ID|8</Hit_id>
          <Hit_def>gi|332865370|ref|XM_527768.3| PREDICTED: Pan troglodytes zinc finger protein 273, transcript variant 2 (ZNF273), mRNA</Hit_def>
          <Hit_accession>8</Hit_accession>
          <Hit_len>4335</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>111.919</Hsp_bit-score>
              <Hsp_score>60</Hsp_score>
              <Hsp_evalue>7.14143e-28</Hsp_evalue>
              <Hsp_query-from>1</Hsp_query-from>
              <Hsp_query-to>66</Hsp_query-to>
              <Hsp_hit-from>2705</Hsp_hit-from>
              <Hsp_hit-to>2640</Hsp_hit-to>
              <Hsp_query-frame>1</Hsp_query-frame>
              <Hsp_hit-frame>-1</Hsp_hit-frame>
              <Hsp_identity>64</Hsp_identity>
              <Hsp_positive>64</Hsp_positive>
              <Hsp_gaps>0</Hsp_gaps>
              <Hsp_align-len>66</Hsp_align-len>
              <Hsp_qseq>TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA</Hsp_qseq>
              <Hsp_hseq>TCACGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA</Hsp_hseq>
              <Hsp_midline>||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
        <Hit>
          <Hit_num>5</Hit_num>
          <Hit_id>gnl|BL_ORD_ID|7</Hit_id>
          <Hit_def>gi|332865372|ref|XM_003318468.1| PREDICTED: Pan troglodytes zinc finger protein 273, transcript variant 1 (ZNF273), mRNA</Hit_def>
          <Hit_accession>7</Hit_accession>
          <Hit_len>4430</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>111.919</Hsp_bit-score>
              <Hsp_score>60</Hsp_score>
              <Hsp_evalue>7.14143e-28</Hsp_evalue>
              <Hsp_query-from>1</Hsp_query-from>
              <Hsp_query-to>66</Hsp_query-to>
              <Hsp_hit-from>2800</Hsp_hit-from>
              <Hsp_hit-to>2735</Hsp_hit-to>
              <Hsp_query-frame>1</Hsp_query-frame>
              <Hsp_hit-frame>-1</Hsp_hit-frame>
              <Hsp_identity>64</Hsp_identity>
              <Hsp_positive>64</Hsp_positive>
              <Hsp_gaps>0</Hsp_gaps>
              <Hsp_align-len>66</Hsp_align-len>
              <Hsp_qseq>TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA</Hsp_qseq>
              <Hsp_hseq>TCACGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA</Hsp_hseq>
              <Hsp_midline>||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
      </Iteration_hits>
      <Iteration_stat>
        <Statistics>
          <Statistics_db-num>23</Statistics_db-num>
          <Statistics_db-len>67750</Statistics_db-len>
          <Statistics_hsp-len>14</Statistics_hsp-len>
          <Statistics_eff-space>3506256</Statistics_eff-space>
          <Statistics_kappa>0.46</Statistics_kappa>
          <Statistics_lambda>1.28</Statistics_lambda>
          <Statistics_entropy>0.85</Statistics_entropy>
        </Statistics>
      </Iteration_stat>
    </Iteration>
  </BlastOutput_iterations>
</BlastOutput>