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########################################
# Program: stretcher
# Rundate: Tue 15 May 2018 17:01:31
# Commandline: stretcher
# -auto
# -stdout
# -asequence emboss_stretcher-I20180515-170128-0371-22292969-p1m.aupfile
# -bsequence emboss_stretcher-I20180515-170128-0371-22292969-p1m.bupfile
# -datafile EDNAFULL
# -gapopen 16
# -gapextend 4
# -aformat3 pair
# -snucleotide1
# -snucleotide2
# Align_format: pair
# Report_file: stdout
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: hg38_chrX_131691529_131830643_47210_48660
# 2: mm10_chrX_50555743_50635321_27140_27743
# Matrix: EDNAFULL
# Gap_penalty: 16
# Extend_penalty: 4
#
# Length: 1450
# Identity: 441/1450 (30.4%)
# Similarity: 441/1450 (30.4%)
# Gaps: 847/1450 (58.4%)
# Score: -2623
#
#
#=======================================
hg38_chrX_131 1 GGCAGGTGCATAGCTTGAGCCTAGGAGTTCAAGTCCAGCCCTGACAATGT 50
| ||||||.|||.||..||. |
mm10_chrX_505 1 G--------------------------TTCAAGGCCATCCGGGAT----T 20
hg38_chrX_131 51 AGAGAGACCCCGTCTCTTCAAAAAATACAAAAAATAGCCAGGCATGGTGA 100
|.|| ||.|..| |.||.|...|.| ||||.||
mm10_chrX_505 21 AAAG-------GTGTGGT-----------AGAACTCTTCTG--ATGGAGA 50
hg38_chrX_131 101 CCTACAATGGAAGCCCTAGCTACGTAGGAGGCGGAAATGGGAGGATCACC 150
| |||..||| ||.||.|||.||
mm10_chrX_505 51 C----AATATAAG--------------------GACATTGGAAGA----- 71
hg38_chrX_131 151 TCAGCCCAGGGAGGCTGATGTTGCAGTGAGCCATGATCATGCCTCTACAC 200
|||||| |.|||| ||.||.||.|.|..||||.
mm10_chrX_505 72 -------AGGGAG-----TCTTGC------CCTTGCTCCTTCGCCTACT- 102
hg38_chrX_131 201 TCCACCCTGGGCAACAGAGTAAGATGCTGTCTAAAATATATATATATGCA 250
||||||.|||.|
mm10_chrX_505 103 ------------------------TGCTGTGTAAGA-------------- 114
hg38_chrX_131 251 TATCTGTGTGTATATATATATATATATATGTGTGTGTGTGTGTGTGTATA 300
|||.||
mm10_chrX_505 115 ---CTGAGT----------------------------------------- 120
hg38_chrX_131 301 TACATATGTGTGTGTATATACATATATGTGTATATATATATGTGTGTATA 350
mm10_chrX_505 121 -------------------------------------------------- 120
hg38_chrX_131 351 TATACATATACATATTCAGCATCACCTTATATTCTTTGAATATATCTACA 400
|.|.||| |.|..|||.||.|
mm10_chrX_505 121 --------------------AACTCCT-AGACCCTTGGACT--------- 140
hg38_chrX_131 401 TCAATACATACTTTTGAGTGCTTGAAATTTTTTATATTTTACTCTAGAAG 450
|.|.|||.||.. |||...|||.
mm10_chrX_505 141 --------TCCATTTCAGCC--------------------ACTACTGAAC 162
hg38_chrX_131 451 AACTGTAAGAAATTATAAAGTAGAAAACTTGTGGTAGGTCAAACATAGTA 500
.|.|||..|.||||.. |..|.|.||| |||.||||...|||
mm10_chrX_505 163 CATTGTTGGGAATTGG---GCTGCAGACT----GTAAGTCATCAATA--- 202
hg38_chrX_131 501 AGAAGAAATAATCACTTTTTAAAGGTCTGTGCTAGGTACTATGATCTGTT 550
|||..|||| |||||.
mm10_chrX_505 203 ---------AATTCCTTT-------------------ACTATA------- 217
hg38_chrX_131 551 CCCTATATATACATAATATGGACTTTTATAAACTAATGTTCAAATTCCCC 600
||.|.|||| |||
mm10_chrX_505 218 --------------------------TAGAGACTA----------TCC-- 229
hg38_chrX_131 601 TGTAGTATAACTTCTTGTTGTTGTTTATTTTTTTTTTTTTGTATTTTTCA 650
||||.||||. |.|
mm10_chrX_505 230 ------ATAAATTCTG-------------------------------TGA 242
hg38_chrX_131 651 TTTTAGATATGGGGTTTCACTCTGTTGACCAGGCTGATCTCGAACCACTG 700
.|.||||.| ||.|| |||.|. ||.||||
mm10_chrX_505 243 CTCTAGAGA---------ACCCT---GACAAT-----------ACAACTG 269
hg38_chrX_131 701 GTCTCAAGCGATCCTCCCATCTTGGACTCCCAAAGTGCTAGGATTACAGG 750
|
mm10_chrX_505 270 G------------------------------------------------- 270
hg38_chrX_131 751 CACGAGGCACCTTGACTGGCCACCATGTACTATAGCTGTTAAAACAAGTT 800
||.|||| ||.||.|.|.|
mm10_chrX_505 271 ---GAAGCAC-------GGACATCCTCT---------------------- 288
hg38_chrX_131 801 TGTTTCACTGATAACTGGAGTACTTTTCAAATATAATTAATAATTCATGG 850
||.|.||||||||| |||
mm10_chrX_505 289 -------------------------TTGAGATATAATTA-----TCA--- 305
hg38_chrX_131 851 AAATAATGATAGCTTTAAAAGTATTGGCACTTTTAAAAACTGAGTTTGTA 900
|.|| || ||||.||.| |||| ||| |
mm10_chrX_505 306 ----ACTG---GC-----AAGTGTTTG----TTTA----------TTG-A 328
hg38_chrX_131 901 AACTTCATATAACATAAAATTAACCATTAAAATGTATTAATTTCAATGGC 950
.|.||.|..|||.|.|||.||||.|.| |.|.| ||.|
mm10_chrX_505 329 TATTTTACTTAAGACAAAGTTAAACCT------------ACTCC--TGTC 364
hg38_chrX_131 951 ATTTAGGACACTCACAATGCAGTGCAAGCATTACCACTATGTAGTGGCAA 1000
.|.|.|| || ||..|||||.. ||| |.|..|||
mm10_chrX_505 365 CTCTGGG-----CA--------TGGTAGCATGG--ACT-TATTCTGG--- 395
hg38_chrX_131 1001 ATCATTTTCACTACCACAAAAGAAAATCCTGGACCCATTAGTTAGTCATT 1050
.|||||||.|. |||||..|.|.|.|| ||
mm10_chrX_505 396 --------AACTACCAGAG--GAAAAGACAGAAGCC------TA------ 423
hg38_chrX_131 1051 CCCCATTCCACTCTCTGCCCAGCCCCTGGCAAACACTCATCTGATTTCCC 1100
|||...||.|||.||| ||||
mm10_chrX_505 424 --------------CTGGAAAGGCCCAGGC-------CATC--------- 443
hg38_chrX_131 1101 TCACTACTGATCATCACAACAAGTGGCCTTGTTCATCTTGTTGTGGGAAC 1150
||| |.||||||.||
mm10_chrX_505 444 ------CTG------------------------CCTCTTGTAGT------ 457
hg38_chrX_131 1151 CAGGAGACCAGAGAGACCAATGGGTGGAACAGGAGGATTTTACTAGGTGG 1200
|.||||||
mm10_chrX_505 458 ---------------------------------------TCACTAGG--- 465
hg38_chrX_131 1201 TCACCGACTCAGCAGATTAACATCCAAAGGCTGAGCCCCAAACCAAGAGA 1250
|.||| ||||.||| |.|
mm10_chrX_505 466 ----------ACCAG-------------GGCTCAGC-----------ATA 481
hg38_chrX_131 1251 GGGCTTGACTTTTATACATATATCTGAAAAGGGCCCAAAACCTGTAAGGC 1300
|..||||.|||.| |.|||||..| |.|.|.||.||. |
mm10_chrX_505 482 GTCCTTGGCTTCT------AAATCTGCTA------CCATATCTTTAT--C 517
hg38_chrX_131 1301 CGGTAAGCAAGCTTACAGCAGAACAAAGGCAGTTTATCAAACAGTGACAG 1350
..||| ||.||.|||..|.|..||| || |||||||
mm10_chrX_505 518 ATGTA---AAACTGACACAAAATTAAA--CA---TATCAAA--------- 550
hg38_chrX_131 1351 GTTTTACAGTTCAGGCATGTCTTGTGACCTTTGCCATAACTGCACAGCTG 1400
|.||.|.|.|. |||.| |||.| |.|||
mm10_chrX_505 551 -------ATTTTATGAAA--------ACCAT-----TAAGT----ATCTG 576
hg38_chrX_131 1401 GAAAACAGGAACTTACAAAATCCTTACAAGCTTGCAGAAACAGTTACAAA 1450
|||||.| |.|||||| ||||||||.|||
mm10_chrX_505 577 GAAAAGA-------AAAAAATC----------------AACAGTTATAAA 603
#---------------------------------------
#---------------------------------------
|
