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Command line: [exonerate -m protein2dna scer_cad1_prot.fa scer_cad1frameshift.fa --showvulgar no --bestn 3]
Hostname: [blackbriar]
C4 Alignment:
------------
Query: sp|P24813|YAP2_YEAST AP-1-like transcription activator YAP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAD1 PE=1 SV=2
Target: gi|296143771|ref|NM_001180731.1| Saccharomyces cerevisiae S288c Cad1p (CAD1) mRNA, complete cds
Model: protein2dna:local
Raw score: 367
Query range: 330 -> 409
Target range: 216 -> 455
331 : HisThrLysThrIleArgThrGlnSerGluAlaIleGluHisIleSerSerAlaIleSerAsnG : 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
HisThrLysThrIleArgThrGlnSerGluAlaIleGluHisIleSerSerAlaIleSerAsnG
217 : CATACTAAAACAATTCGAACCCAATCTGAAGCAATTGAACACATTAGCAGCGCCATATCGAATG : 280
353 : lyLysAlaSerCysTyrHisIleLeuGluGluIleSerSerLeuProLysTyrSerSerLeuAs : 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
lyLysAlaSerCysTyrHisIleLeuGluGluIleSerSerLeuProLysTyrSerSerLeuAs
281 : GAAAAGCGTCTTGCTACCACATTCTCGAAGAGATCTCCTCCCTACCAAAATATTCATCGTTGGA : 343
374 : p--IleAspAspLeuCysSerGluLeuIleIleLysAlaLysCysThrAspAspCysLysIleV : 394
|##|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
p##IleAspAspLeuCysSerGluLeuIleIleLysAlaLysCysThrAspAspCysLysIleV
344 : CAAATAGATGATTTATGCAGCGAATTAATAATCAAGGCAAAATGTACAGATGACTGCAAAATAG : 408
395 : alValLysAlaArgAspLeuGlnSerAlaLeuValArgGlnLeuLeu : 409
|||||||||||||||||||||||||||||||||||||||||||||||
alValLysAlaArgAspLeuGlnSerAlaLeuValArgGlnLeuLeu
409 : TAGTCAAAGCTCGCGACTTACAGAGTGCTCTGGTTAGACAGCTCCTG : 455
C4 Alignment:
------------
Query: sp|P24813|YAP2_YEAST AP-1-like transcription activator YAP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAD1 PE=1 SV=2
Target: gi|296143771|ref|NM_001180731.1| Saccharomyces cerevisiae S288c Cad1p (CAD1) mRNA, complete cds
Model: protein2dna:local
Raw score: 322
Query range: 6 -> 70
Target range: 16 -> 208
7 : LysGlyGlnGlnIleTyrLeuAlaGlyAspMetLysLysGlnMetLeuLeuAsnLysAspGlyT : 28
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LysGlyGlnGlnIleTyrLeuAlaGlyAspMetLysLysGlnMetLeuLeuAsnLysAspGlyT
17 : AAAGGTCAGCAAATATATTTAGCAGGTGACATGAAGAAGCAAATGTTGCTAAATAAAGATGGAA : 80
29 : hrProLysArgLysValGlyArgProGlyArgLysArgIleAspSerGluAlaLysSerArgAr : 49
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
hrProLysArgLysValGlyArgProGlyArgLysArgIleAspSerGluAlaLysSerArgAr
81 : CACCTAAGAGGAAGGTGGGCAGACCAGGCAGAAAAAGGATTGACTCTGAAGCTAAGAGTAGGAG : 143
50 : gThrAlaGlnAsnArgAlaAlaGlnArgAlaPheArgAspArgLysGluAlaLysMetLysSer : 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
gThrAlaGlnAsnArgAlaAlaGlnArgAlaPheArgAspArgLysGluAlaLysMetLysSer
144 : GACTGCCCAGAATAGGGCAGCTCAACGAGCGTTCCGAGATAGGAAAGAAGCCAAAATGAAGAGT : 206
-- completed exonerate analysis
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