1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
|
# fasta36 -E 1.7 -F 1.3 -m 10 -n mrna_s00.fasta mrnalib.fasta
FASTA searches a protein or DNA sequence data bank
version 36.3.5c Dec, 2011(preload8)
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: mrna_s00.fasta
1>>>random_s00 - 15 nt
Library: mrnalib.fasta
178611 residues in 250 sequences
Statistics: Altschul/Gish params: n0: 15 Lambda: 0.192 K: 0.177 H: 0.360
statistics sampled from 59 (59) to 59 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: +5/-4 matrix (5:-4), open/ext: -12/-4
ktup: 1, E-join: 0.25 (0.802), E-opt: 0.05 (0.126), width: 16
Scan time: 0.060
!! No sequences with E() < 1.7
>>><<<
>>>///
15 residues in 1 query sequences
178611 residues in 250 library sequences
Tcomplib [36.3.5c Dec, 2011(preload8)] (4 proc in memory [0G])
start: Tue May 8 01:06:57 2012 done: Tue May 8 01:06:57 2012
Total Scan time: 0.060 Total Display time: 0.000
Function used was FASTA [36.3.5c Dec, 2011(preload8)]
|
