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|
# fasta36 -E 0.5 -F 0.3 -m 10 prot_s02.fasta protlib.fasta
FASTA searches a protein or DNA sequence data bank
version 36.3.5c Dec, 2011(preload8)
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: prot_s02.fasta
1>>>sp|Q9Y2H6|265-345 - 81 aa
Library: protlib.fasta
1375680 residues in 250 sequences
Statistics: (shuffled [494]) MLE statistics: Lambda= 0.1722; K=0.003655
statistics sampled from 237 (237) to 494 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.996), E-opt: 0.2 (0.948), width: 16
Scan time: 0.180
The best scores are: opt bits E(250)
gi|167518632|ref|XP_001743656.1| hypothetical prot (1145) 68 26.1 0.32
gi|9507013|ref|NP_062122.1| receptor-type tyrosine (1898) 70 26.6 0.37
gi|115648048|ref|NP_035343.2| receptor-type tyrosi (1898) 70 26.6 0.37
gi|354481005|ref|XP_003502693.1| PREDICTED: LOW QU (1898) 70 26.6 0.37
gi|328789682|ref|XP_003251305.1| PREDICTED: LOW QU (8619) 78 28.6 0.43
gi|260828627|ref|XP_002609264.1| hypothetical prot (4389) 74 27.6 0.43
gi|119220552|ref|NP_689957.3| protein sidekick-1 i (2213) 70 26.6 0.43
gi|332864595|ref|XP_518946.3| PREDICTED: protein s (2213) 70 26.6 0.43
gi|312079033|ref|XP_003141999.1| hypothetical prot (1184) 66 25.6 0.46
gi|159484056|ref|XP_001700076.1| predicted protein (1007) 65 25.4 0.47
gi|339251812|ref|XP_003372928.1| hypothetical prot (1013) 65 25.4 0.47
gi|296192587|ref|XP_002744137.1| PREDICTED: protei (2093) 69 26.4 0.49
gi|194218739|ref|XP_001492769.2| PREDICTED: protei (2113) 69 26.4 0.49
gi|301766892|ref|XP_002918867.1| PREDICTED: LOW QU (33410) 85 30.3 0.5
gi|297465038|ref|XP_002703630.1| PREDICTED: LOW QU (33452) 85 30.3 0.5
gi|297471578|ref|XP_002685306.1| PREDICTED: LOW QU (33452) 85 30.3 0.5
gi|359323893|ref|XP_535982.4| PREDICTED: LOW QUALI (33534) 85 30.3 0.5
>>>sp|Q9Y2H6|265-345, 81 aa vs protlib.fasta library
; pg_name: fasta36
; pg_ver: 36.3.5c Dec, 2011(preload8)
; pg_argv: fasta36 -E 0.5 -F 0.3 -m 10 prot_s02.fasta protlib.fasta; pg_name_alg: FASTA
; pg_ver_rel: 3.7 Nov 2010
; pg_matrix: BL50 (15:-5)
; pg_open-ext: -10 -2
; pg_ktup: 2
; pg_join_E(): 1 (0.996)
; pg_optcut_E(): 0.2 (0.948)
; mp_extrap: 60000 494
; mp_stats: (shuffled [494]) MLE statistics: Lambda= 0.1722; K=0.003655
; mp_KS: -0.0000 (N=0) at 30
; mp_Algorithm: FASTA (3.7 Nov 2010) [optimized]
; mp_Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.996), E-opt: 0.2 (0.948), width: 16
>>gi|167518632|ref|XP_001743656.1| hypothetical protein [Monosiga brevicollis MX1]
; fa_frame: f
; fa_initn: 88
; fa_init1: 68
; fa_opt: 68
; fa_z-score: 97.5
; fa_bits: 26.1
; fa_expect: 0.32
; sw_score: 68
; sw_ident: 0.435
; sw_sim: 0.652
; sw_overlap: 23
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 57
; al_stop: 79
; al_display_start: 27
SLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPA
MDYHA
>gi|167518632|ref|XP_001743656.1| ..
; sq_len: 1145
; sq_offset: 1
; sq_type: p
; al_start: 425
; al_stop: 447
; al_display_start: 395
VAQTTVDLSWEAIQNATEYILEMDDDSGYGFRPVYTGIDTNYKVVDLTPN
CDYRFRLRVVNPRGKGPASEVLDIKTRPERPAAPGAPRVLGRPTQDALAL
EWTVHPSAQDNDTPPSYLVQ
>>gi|9507013|ref|NP_062122.1| receptor-type tyrosine-protein phosphatase F precursor [Rattus norvegicus]
; fa_frame: f
; fa_initn: 83
; fa_init1: 43
; fa_opt: 72
; fa_z-score: 96.2
; fa_bits: 26.6
; fa_expect: 0.37
; sw_score: 72
; sw_ident: 0.268
; sw_sim: 0.549
; sw_overlap: 71
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 9
; al_stop: 79
; al_display_start: 1
----------------------LLSNIVKPVASDIQARTVVLTWSPPSSL
INGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMD
YHA
>gi|9507013|ref|NP_062122.1| ..
; sq_len: 1898
; sq_offset: 1
; sq_type: p
; al_start: 326
; al_stop: 385
; al_display_start: 296
YTCVAISSLGMIEATAQVTVKALPKPPIDLVVTETTATSVTLTWD-----
-SGNTEPVS---FYG--IQYRAAGTDGPFQEVDGVASTRYSIGGLSPFSE
YAFRVLAVNSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQW
EPPEEPNGLVRGYRVYYTPDSRRPLSAWHK
>--
; fa_frame: f
; fa_initn: 98
; fa_init1: 70
; fa_opt: 70
; fa_z-score: 96.2
; fa_bits: 26.6
; fa_expect: 0.37
; sw_score: 70
; sw_ident: 0.324
; sw_sim: 0.622
; sw_overlap: 37
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 44
; al_stop: 80
; al_display_start: 14
QARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVG
EETNITLNDLKPAMDYHA
>gi|9507013|ref|NP_062122.1| ..
; sq_len: 1898
; sq_offset: 1
; sq_type: p
; al_start: 543
; al_stop: 579
; al_display_start: 513
AQPADFQAKAESDTRIQLSWLLPPQERIIKYELVYWAAEDEGQQHKVTFD
PTSSYTLEDLKPDTLYHFQLAARSDLGVGVFTPTVEACTAQSTPSAPPQK
VTCVSTGSTTVRVSWVPPPA
>>gi|115648048|ref|NP_035343.2| receptor-type tyrosine-protein phosphatase F precursor [Mus musculus]
; fa_frame: f
; fa_initn: 98
; fa_init1: 70
; fa_opt: 73
; fa_z-score: 96.2
; fa_bits: 26.6
; fa_expect: 0.37
; sw_score: 73
; sw_ident: 0.256
; sw_sim: 0.549
; sw_overlap: 82
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 8
; al_stop: 80
; al_display_start: 1
-----------------------LLSNIVKPVASDIQARTVVLTWSPPSS
L-INGETDESS-----VP---ELYGYEVLISSTGKDGKYKSVYVGEETNI
TLNDLKPAMDYHA
>gi|115648048|ref|NP_035343.2| ..
; sq_len: 1898
; sq_offset: 1
; sq_type: p
; al_start: 498
; al_stop: 579
; al_display_start: 468
DAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPTIQVKTQQGVPAQPAD
FQANAESDTRIQLSWLLPPQERIVKYELVYWAAEDEGQQHKVTFDPTSSY
TLEDLKPDTLYHFQLAARSDLGVGVFTPTVEARTAQSTPSAPPQKVTCVS
TGSTTVRVSWVPPPADSRNGIITQYSVAYE
>--
; fa_frame: f
; fa_initn: 76
; fa_init1: 43
; fa_opt: 72
; fa_z-score: 96.2
; fa_bits: 26.6
; fa_expect: 0.37
; sw_score: 72
; sw_ident: 0.268
; sw_sim: 0.549
; sw_overlap: 71
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 9
; al_stop: 79
; al_display_start: 1
----------------------LLSNIVKPVASDIQARTVVLTWSPPSSL
INGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMD
YHA
>gi|115648048|ref|NP_035343.2| ..
; sq_len: 1898
; sq_offset: 1
; sq_type: p
; al_start: 326
; al_stop: 385
; al_display_start: 296
YTCVAISSLGMIEATAQVTVKALPKPPIDLVVTETTATSVTLTWD-----
-SGNTEPVS---FYG--IQYRAAGTDGPFQEVDGVASTRYSIGGLSPFSE
YAFRVLAVNSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQW
EPPEEPNGLVRGYRVYYTPDSRRPLSAWHK
>>gi|354481005|ref|XP_003502693.1| PREDICTED: LOW QUALITY PROTEIN: receptor-type tyrosine-protein phosphatase F-like [Cricetulus griseus]
; fa_frame: f
; fa_initn: 98
; fa_init1: 70
; fa_opt: 70
; fa_z-score: 96.2
; fa_bits: 26.6
; fa_expect: 0.37
; sw_score: 70
; sw_ident: 0.324
; sw_sim: 0.622
; sw_overlap: 37
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 44
; al_stop: 80
; al_display_start: 14
QARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVG
EETNITLNDLKPAMDYHA
>gi|354481005|ref|XP_003502693.1| ..
; sq_len: 1898
; sq_offset: 1
; sq_type: p
; al_start: 543
; al_stop: 579
; al_display_start: 513
AQPADFLAEAESDTRIHLSWLLPPQERITKYELVYWAAEDEGQQHKVTFD
PTSSYTLEDLKPDTVYHFQLAARSDLGVGVFTPTIEARTAQSTPSAPPQK
VTCVSTGSTTVRVSWVPPPA
>>gi|328789682|ref|XP_003251305.1| PREDICTED: LOW QUALITY PROTEIN: twitchin [Apis mellifera]
; fa_frame: f
; fa_initn: 70
; fa_init1: 70
; fa_opt: 78
; fa_z-score: 95.2
; fa_bits: 28.6
; fa_expect: 0.43
; sw_score: 78
; sw_ident: 0.286
; sw_sim: 0.543
; sw_overlap: 70
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 10
; al_stop: 79
; al_display_start: 1
---------------------LLSNIVKPVASDIQARTVVLTWSPPSSLI
NGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDY
HA
>gi|328789682|ref|XP_003251305.1| ..
; sq_len: 8619
; sq_offset: 1
; sq_type: p
; al_start: 4761
; al_stop: 4823
; al_display_start: 4731
ITAENINGEDEAFVKVTVLDVPSPPQGPLRASDVHAEGCTLTWKPP----
--EDDGGQPIDKYVVEKMDEATGRWVPAGETD-GPQTSLQVEGLTPGHKY
KFRVRAVNKQGKSEPLAAMQSIEAKNPFDEPGKPGTPVVSDYDSDFVELQ
WDRPQEDGGSPITGYIIEKRDKYNPNWEKC
>>gi|260828627|ref|XP_002609264.1| hypothetical protein BRAFLDRAFT_124749 [Branchiostoma floridae]
; fa_frame: f
; fa_initn: 81
; fa_init1: 73
; fa_opt: 97
; fa_z-score: 95.1
; fa_bits: 27.6
; fa_expect: 0.43
; sw_score: 97
; sw_ident: 0.214
; sw_sim: 0.671
; sw_overlap: 70
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 10
; al_stop: 79
; al_display_start: 1
---------------------LLSNIVKPVASDIQARTVVLTWSPPSSLI
NGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDY
HA
>gi|260828627|ref|XP_002609264.1| ..
; sq_len: 4389
; sq_offset: 1
; sq_type: p
; al_start: 2242
; al_stop: 2302
; al_display_start: 2212
ALTGVGEGQTSDSVTVLTPAGAPSFPMDVEANAVDSQSIRINWQPPTE-P
NGN--------VLGYNIFYTTEGESGNNQQTVGPDDTTYVIEGLRPATQY
AITLNAFTEAGEGERTEERVVTTLTDVPGAPASIDATAVDTTSIRVEWQA
PSEMGGTLLGYKIYYQLVGEDSPSTADVEP
>--
; fa_frame: f
; fa_initn: 177
; fa_init1: 55
; fa_opt: 90
; fa_z-score: 95.1
; fa_bits: 27.6
; fa_expect: 0.43
; sw_score: 90
; sw_ident: 0.306
; sw_sim: 0.569
; sw_overlap: 72
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 9
; al_stop: 79
; al_display_start: 1
----------------------LLSNIVKPVASDIQA-RTVVLTWSPPSS
LINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAM
DYHA
>gi|260828627|ref|XP_002609264.1| ..
; sq_len: 4389
; sq_offset: 1
; sq_type: p
; al_start: 2819
; al_stop: 2881
; al_display_start: 2789
IAGVTGGGEGDRSDQVKVTTLEGVPSTPLSVTADGQAPDTVVVTWQSPAE
T-NGD--------LLGYYIYYQVVGSTETSQAETGPDETTYSISGLRPAT
EYIITLTAYTEGGESERSGEALVRTLSGVPSTPLSVTAEENAPDAILVTW
EPPTQTNGDLLGYYIYYQVDGDTETSRAEA
>--
; fa_frame: f
; fa_initn: 196
; fa_init1: 61
; fa_opt: 84
; fa_z-score: 95.1
; fa_bits: 27.6
; fa_expect: 0.43
; sw_score: 84
; sw_ident: 0.278
; sw_sim: 0.569
; sw_overlap: 72
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 9
; al_stop: 79
; al_display_start: 1
----------------------LLSNIVKPVASDIQA-RTVVLTWSPPSS
LINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAM
DYHA
>gi|260828627|ref|XP_002609264.1| ..
; sq_len: 4389
; sq_offset: 1
; sq_type: p
; al_start: 3301
; al_stop: 3363
; al_display_start: 3271
LTAYTEGGESERSGEALVSTLSGAPSTPLSVTAEGQAPDTITVTWQSPAE
T-NGD--------LLGYYIYYQVVGSTEDVRAEAGPEETTYSISGLRPAT
EYIITLTAYTEGGESERSGEVLVQTLSGAPGAPASIRASSLGSEAIEVSW
QPPPQSNGEILGYRLHYQIVGEESASTQEV
>--
; fa_frame: f
; fa_initn: 79
; fa_init1: 49
; fa_opt: 83
; fa_z-score: 95.1
; fa_bits: 27.6
; fa_expect: 0.43
; sw_score: 83
; sw_ident: 0.279
; sw_sim: 0.574
; sw_overlap: 68
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 13
; al_stop: 80
; al_display_start: 1
------------------LLSNIVKPVASDIQARTVVLTWSPPSSLINGE
TDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHA
>gi|260828627|ref|XP_002609264.1| ..
; sq_len: 4389
; sq_offset: 1
; sq_type: p
; al_start: 3687
; al_stop: 3747
; al_display_start: 3657
SAGDGERSETITVQTEEGVPGAPREVQGLAIDSTTIELQWMPPSP-----
-DEQN-GVIKGYKILYKKVGEEGENEEDAGLLDLMYTLSDLEKWTEYNIW
VSAYTSAGDGLRSPVIVVRTGEDVPGPPIGIEARPGDDSASVLVQWQQPI
VQNGVIVGYKILYQKSGDEDVEETDIGTPQ
>--
; fa_frame: f
; fa_initn: 100
; fa_init1: 50
; fa_opt: 81
; fa_z-score: 95.1
; fa_bits: 27.6
; fa_expect: 0.43
; sw_score: 81
; sw_ident: 0.257
; sw_sim: 0.571
; sw_overlap: 70
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 10
; al_stop: 79
; al_display_start: 1
---------------------LLSNIVKPVASDIQARTVVLTWSPPSSLI
NGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDY
HA
>gi|260828627|ref|XP_002609264.1| ..
; sq_len: 4389
; sq_offset: 1
; sq_type: p
; al_start: 3399
; al_stop: 3459
; al_display_start: 3369
AYTEGGESERSGEVLVQTLSGAPGAPASIRASSLGSEAIEVSWQPPPQS-
NGE--------ILGYRLHYQIVGEESASTQEVEGYETFYLLRGLRPVTEY
SIWLLAFTAAGDGERSEQVTVQTAEGVPGAPRDVKGQAVEPTTITVDWQP
PLEINGVLLGYKVIYMPENAAEFSTVELGP
>--
; fa_frame: f
; fa_initn: 178
; fa_init1: 58
; fa_opt: 81
; fa_z-score: 95.1
; fa_bits: 27.6
; fa_expect: 0.43
; sw_score: 81
; sw_ident: 0.271
; sw_sim: 0.557
; sw_overlap: 70
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 10
; al_stop: 79
; al_display_start: 1
---------------------LLSNIVKPVASDIQARTVVLTWSPPSSLI
NGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDY
HA
>gi|260828627|ref|XP_002609264.1| ..
; sq_len: 4389
; sq_offset: 1
; sq_type: p
; al_start: 2146
; al_stop: 2206
; al_display_start: 2116
GGLQPFTVYIISVSGFTAAGEVPASPTGLGATPVDPRTVRVEWQPPQQ-P
NGE--------IQGYNIYYRTTESDEDALQQAGAQDIFLTLTGLSPFTEY
TIRVSALTGVGEGQTSDSVTVLTPAGAPSFPMDVEANAVDSQSIRINWQP
PTEPNGNVLGYNIFYTTEGESGNNQQTVGP
>--
; fa_frame: f
; fa_initn: 102
; fa_init1: 48
; fa_opt: 79
; fa_z-score: 95.1
; fa_bits: 27.6
; fa_expect: 0.43
; sw_score: 79
; sw_ident: 0.294
; sw_sim: 0.544
; sw_overlap: 68
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 13
; al_stop: 79
; al_display_start: 1
------------------LLSNIVKPVASDIQARTVVLTWSPPSSLINGE
TDESSVPELYGYEVLISSTGKDGKYKSVYVGE-ETNITLNDLKPAMDYHA
>gi|260828627|ref|XP_002609264.1| ..
; sq_len: 4389
; sq_offset: 1
; sq_type: p
; al_start: 3498
; al_stop: 3555
; al_display_start: 3468
AAGDGERSEQVTVQTAEGVPGAPRDVKGQAVEPTTITVDWQPPLE-INGV
--------LLGYKVIYMPENA-AEFSTVELGPAELSTMLLDLEPATTYSI
VVLAFTSAGDGDESEEILVSTMQGVPGAPTDLSAVETTSNSMKLSWQAPE
GDIEGYRVFYSLTGSDTEEAVDTRSADASW
>>gi|119220552|ref|NP_689957.3| protein sidekick-1 isoform 1 [Homo sapiens]
; fa_frame: f
; fa_initn: 87
; fa_init1: 51
; fa_opt: 70
; fa_z-score: 95.0
; fa_bits: 26.6
; fa_expect: 0.43
; sw_score: 70
; sw_ident: 0.299
; sw_sim: 0.582
; sw_overlap: 67
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 9
; al_stop: 73
; al_display_start: 1
----------------------LLSNIVKPVASDIQARTVVLTWSPPSSL
INGETDESSVPELYGYEVLISSTGKDGKYKSVYV-GEETNITL-NDLKPA
MDYHA
>gi|119220552|ref|NP_689957.3| ..
; sq_len: 2213
; sq_offset: 1
; sq_type: p
; al_start: 776
; al_stop: 835
; al_display_start: 746
VNEVGRGQYSAETSRLMLPEEPPSAPPKNIVASGRTNQSIMVQWQPPP--
---ETEHNGV--LRGYILRYRLAGLPGEYQQRNITSPEVNYCLVTDLIIW
TQYEIQVAAYNGAGLGVFSRAVTEYTLQGVPTAPPQNVQTEAVNSTTIQF
LWNPPPQQFINGINQGYKLLAWPADAPEAV
>>gi|332864595|ref|XP_518946.3| PREDICTED: protein sidekick-1 [Pan troglodytes]
; fa_frame: f
; fa_initn: 68
; fa_init1: 45
; fa_opt: 76
; fa_z-score: 95.0
; fa_bits: 26.6
; fa_expect: 0.43
; sw_score: 76
; sw_ident: 0.325
; sw_sim: 0.610
; sw_overlap: 77
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 5
; al_stop: 80
; al_display_start: 1
--------------------------LLSNIVKPVASDIQARTVVLTWSP
PSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEE-TNITLNDL
KPAMDYHA
>gi|332864595|ref|XP_518946.3| ..
; sq_len: 2213
; sq_offset: 1
; sq_type: p
; al_start: 675
; al_stop: 740
; al_display_start: 645
YSCEIVSEGGNDSRMARLEVIELPHSPQNLLASPNSS--HSHAVVLSWVR
P---FDGNS-----PILY-YIVELSENNSPWKVHLSNVGPEMTGITVSGL
TPARTYQFRVCAVNEVGRGQYSAETSRLMLPEEPPSAPPKNIVASGRTNQ
SIMVQWQPPPETEHNGVLRGYILRYRLAGL
>--
; fa_frame: f
; fa_initn: 87
; fa_init1: 51
; fa_opt: 70
; fa_z-score: 95.0
; fa_bits: 26.6
; fa_expect: 0.43
; sw_score: 70
; sw_ident: 0.299
; sw_sim: 0.582
; sw_overlap: 67
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 9
; al_stop: 73
; al_display_start: 1
----------------------LLSNIVKPVASDIQARTVVLTWSPPSSL
INGETDESSVPELYGYEVLISSTGKDGKYKSVYV-GEETNITL-NDLKPA
MDYHA
>gi|332864595|ref|XP_518946.3| ..
; sq_len: 2213
; sq_offset: 1
; sq_type: p
; al_start: 776
; al_stop: 835
; al_display_start: 746
VNEVGRGQYSAETSRLMLPEEPPSAPPKNIVASGRTNQSIMVQWQPPP--
---ETEHNGV--LRGYILRYRLAGLPGEYQQRNITSPEVNYCLVTDLIIW
TQYEIQVAAYNGAGLGVFSRAVTEYTLQGVPTAPPQNVQTEAVNSTTIQF
LWNPPPQQFINGINQGYKLLAWPADAPEAV
>>gi|312079033|ref|XP_003141999.1| hypothetical protein LOAG_06415 [Loa loa]
; fa_frame: f
; fa_initn: 65
; fa_init1: 54
; fa_opt: 66
; fa_z-score: 94.6
; fa_bits: 25.6
; fa_expect: 0.46
; sw_score: 66
; sw_ident: 0.391
; sw_sim: 0.609
; sw_overlap: 46
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 11
; al_stop: 53
; al_display_start: 1
--------------------LLSNIVKPVASDIQART-VVLTWSPPSSLI
NGETDESSVPELYGYEVLI--SSTGKDGKYKSVYVGEETNITLNDLKPAM
DYHA
>gi|312079033|ref|XP_003141999.1| ..
; sq_len: 1184
; sq_offset: 1
; sq_type: p
; al_start: 716
; al_stop: 756
; al_display_start: 686
ISISFDGTRLEGEWSRVAVGRTAAQPPSPPTDVYVDTDNVLHWSPPNST-
NG----ASITEYIIERILVLSSSTSKSKSDNDQATSADCGWTVKRESAEV
LSISVAEGQPGCKYQLSVSA
>>gi|159484056|ref|XP_001700076.1| predicted protein [Chlamydomonas reinhardtii]
; fa_frame: f
; fa_initn: 152
; fa_init1: 64
; fa_opt: 93
; fa_z-score: 94.5
; fa_bits: 25.4
; fa_expect: 0.47
; sw_score: 93
; sw_ident: 0.292
; sw_sim: 0.569
; sw_overlap: 72
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 8
; al_stop: 79
; al_display_start: 1
-----------------------LLSNIVKPVASDIQARTVVLTWSPPSS
LINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAM
DYHA
>gi|159484056|ref|XP_001700076.1| ..
; sq_len: 1007
; sq_offset: 1
; sq_type: p
; al_start: 66
; al_stop: 127
; al_display_start: 36
VQAINPLGEGPFSLCSAYTTQATVPAAPEPPVVQTASSSTITLAWAPPA-
------DNGSPITAYCLE---RDDGGVGDFTLEYAGPNTSCTVKGLKPGQ
AYRFRLRADNDEGKSMWSSTASLSTGAAPPDSPVALQVVTAGRTSATMAW
RTPDDDGGSKVVAFGVELQAKSKAATACMG
>>gi|339251812|ref|XP_003372928.1| hypothetical protein Tsp_10483 [Trichinella spiralis]
; fa_frame: f
; fa_initn: 74
; fa_init1: 60
; fa_opt: 79
; fa_z-score: 94.4
; fa_bits: 25.4
; fa_expect: 0.47
; sw_score: 79
; sw_ident: 0.314
; sw_sim: 0.557
; sw_overlap: 70
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 10
; al_stop: 79
; al_display_start: 1
---------------------LLSNIVKPVASDIQARTVVLTWSPPSSLI
NGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDY
HA
>gi|339251812|ref|XP_003372928.1| ..
; sq_len: 1013
; sq_offset: 1
; sq_type: p
; al_start: 505
; al_stop: 563
; al_display_start: 475
ARNSAGFGPVSEPVSVVTQPGIPGQPQNVKASAIGARRILLTWESP--LF
SSD--------ITGYVLRYNSTSTDHVEEEVG-GSKTERVVENLTPNTDY
SFQVYAKSQRGKGLFSRAVSQRTNPSVPSGAPESVVVEALSSRQLRVIWE
PPLKSQQNGLITGYRINWEPLINADDDADD
>>gi|296192587|ref|XP_002744137.1| PREDICTED: protein sidekick-1 [Callithrix jacchus]
; fa_frame: f
; fa_initn: 87
; fa_init1: 51
; fa_opt: 69
; fa_z-score: 94.1
; fa_bits: 26.4
; fa_expect: 0.49
; sw_score: 69
; sw_ident: 0.286
; sw_sim: 0.571
; sw_overlap: 63
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 9
; al_stop: 70
; al_display_start: 1
----------------------LLSNIVKPVASDIQARTVVLTWSPPSSL
INGETDESSVPELYGYEVLISSTGKDGKYKSVYV-GEETNITLNDLKPAM
DYHA
>gi|296192587|ref|XP_002744137.1| ..
; sq_len: 2093
; sq_offset: 1
; sq_type: p
; al_start: 702
; al_stop: 757
; al_display_start: 672
VNEVGRGQYSAETSRLMLPEEPPSAPPKNIVASGRTNQSIMVQWQPPP--
---ETEHNGV--LRGYILRYRLAGLPGEYQQRNITSPEVNYCLVMDLIIW
TQYEIQVAAYNGAGLGVFSRAVTEYTLQGVPTAPPQNVQTEAVNSTTIQF
LWNPPPQQFINGINQGYKLLAWPADAPEAV
>>gi|194218739|ref|XP_001492769.2| PREDICTED: protein sidekick-1 [Equus caballus]
; fa_frame: f
; fa_initn: 87
; fa_init1: 51
; fa_opt: 69
; fa_z-score: 94.1
; fa_bits: 26.4
; fa_expect: 0.49
; sw_score: 69
; sw_ident: 0.286
; sw_sim: 0.571
; sw_overlap: 63
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 9
; al_stop: 70
; al_display_start: 1
----------------------LLSNIVKPVASDIQARTVVLTWSPPSSL
INGETDESSVPELYGYEVLISSTGKDGKYKSVYV-GEETNITLNDLKPAM
DYHA
>gi|194218739|ref|XP_001492769.2| ..
; sq_len: 2113
; sq_offset: 1
; sq_type: p
; al_start: 681
; al_stop: 736
; al_display_start: 651
VNQVGKGQYSTETSRLMLPEEPPSAPPKNIVASGRTNQSIMVQWQPPP--
---ETEHNGV--LRGYILRYRLAGLPGEYQQRNITSPEVNYCLVTELIIW
TQYEIQVAAYNGAGLGVFSRAVTEYTLQGVPTAPPQNVQAEAVNSTTIQF
LWNPPPQQFINGINQGYKLLAWPADVPEAS
>>gi|301766892|ref|XP_002918867.1| PREDICTED: LOW QUALITY PROTEIN: titin-like [Ailuropoda melanoleuca]
; fa_frame: f
; fa_initn: 125
; fa_init1: 74
; fa_opt: 85
; fa_z-score: 94.0
; fa_bits: 30.3
; fa_expect: 0.5
; sw_score: 85
; sw_ident: 0.290
; sw_sim: 0.580
; sw_overlap: 69
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 12
; al_stop: 80
; al_display_start: 1
-------------------LLSNIVKPVASDIQARTVVLTWSPPSSLING
ETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHA
>gi|301766892|ref|XP_002918867.1| ..
; sq_len: 33410
; sq_offset: 1
; sq_type: p
; al_start: 30222
; al_stop: 30282
; al_display_start: 30192
LENKCGKKAVYIKVRVIGNPNPPEGPLEYDDIQARSVRVSWRPPAD--DG
GAD------ILGYILERREVSKAAWYTIDSRVRGTSLVVKGLKENVEYHF
RVSAENQFGISKPLKSEEPVIPKTPLNPPEPPSNPPEVLDVTKSSVSLSW
SRPKDDGGSRVTGYYIERKETSTDKWVRHN
>>gi|297465038|ref|XP_002703630.1| PREDICTED: LOW QUALITY PROTEIN: titin [Bos taurus]
; fa_frame: f
; fa_initn: 126
; fa_init1: 74
; fa_opt: 85
; fa_z-score: 94.0
; fa_bits: 30.3
; fa_expect: 0.5
; sw_score: 85
; sw_ident: 0.290
; sw_sim: 0.580
; sw_overlap: 69
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 12
; al_stop: 80
; al_display_start: 1
-------------------LLSNIVKPVASDIQARTVVLTWSPPSSLING
ETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHA
>gi|297465038|ref|XP_002703630.1| ..
; sq_len: 33452
; sq_offset: 1
; sq_type: p
; al_start: 30256
; al_stop: 30316
; al_display_start: 30226
LENKCGKKAVYIKVRVIGNPNTPEGPLEYDDIQARSVRVSWRPPAD--DG
GAD------ILGYILERREVPKSAWYTIDSRVRGTSLVVKGLKENVEYHF
RVSAENQFGISKPLKSEEPVIPKTPLNPPEPPSNPPEILDVTKSSVSLSW
SRPKDDGGSRVTGYYIERKETSTDKWVRHN
>>gi|297471578|ref|XP_002685306.1| PREDICTED: LOW QUALITY PROTEIN: titin [Bos taurus]
; fa_frame: f
; fa_initn: 126
; fa_init1: 74
; fa_opt: 85
; fa_z-score: 94.0
; fa_bits: 30.3
; fa_expect: 0.5
; sw_score: 85
; sw_ident: 0.290
; sw_sim: 0.580
; sw_overlap: 69
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 12
; al_stop: 80
; al_display_start: 1
-------------------LLSNIVKPVASDIQARTVVLTWSPPSSLING
ETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHA
>gi|297471578|ref|XP_002685306.1| ..
; sq_len: 33452
; sq_offset: 1
; sq_type: p
; al_start: 30256
; al_stop: 30316
; al_display_start: 30226
LENKCGKKAVYIKVRVIGNPNTPEGPLEYDDIQARSVRVSWRPPAD--DG
GAD------ILGYILERREVPKSAWYTIDSRVRGTSLVVKGLKENVEYHF
RVSAENQFGISKPLKSEEPVIPKTPLNPPEPPSNPPEILDVTKSSVSLSW
SRPKDDGGSRVTGYYIERKETSTDKWVRHN
>>gi|359323893|ref|XP_535982.4| PREDICTED: LOW QUALITY PROTEIN: titin [Canis lupus familiaris]
; fa_frame: f
; fa_initn: 126
; fa_init1: 74
; fa_opt: 85
; fa_z-score: 94.0
; fa_bits: 30.3
; fa_expect: 0.5
; sw_score: 85
; sw_ident: 0.290
; sw_sim: 0.580
; sw_overlap: 69
>sp|Q9Y2H6|26 ..
; sq_len: 81
; sq_offset: 1
; sq_type: p
; al_start: 12
; al_stop: 80
; al_display_start: 1
-------------------LLSNIVKPVASDIQARTVVLTWSPPSSLING
ETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHA
>gi|359323893|ref|XP_535982.4| ..
; sq_len: 33534
; sq_offset: 1
; sq_type: p
; al_start: 30336
; al_stop: 30396
; al_display_start: 30306
LENKCGKKTVYIKVRVIGNPNPPEGPLEYDDIQARSVRVSWRPPAD--DG
GAD------ILGYILERREVSKAAWYTIDSRVRGTSLVVKGLKENVEYHF
RVSAENQFGISKSLKSEEPVIPKTPLNPPEPPSNPPEVLDVTKSSVSLSW
SRPKDDGGSRVTGYYIERKETSTDKWVRHN
>>><<<
>>>///
81 residues in 1 query sequences
1375680 residues in 250 library sequences
Tcomplib [36.3.5c Dec, 2011(preload8)] (4 proc in memory [0G])
start: Tue May 8 01:06:58 2012 done: Tue May 8 01:06:59 2012
Total Scan time: 0.180 Total Display time: 0.040
Function used was FASTA [36.3.5c Dec, 2011(preload8)]
|
