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Query 4P79:A|PDBID|CHAIN|SEQUENCE
Match_columns 198
No_of_seqs 110 out of 1051
Neff 10.453
Searched_HMMs 46616
Date Thu Nov 29 16:33:45 2018
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -o ../results/4P79_1.hhr -oa3m ../results/4P79_1.a3m -p 50 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 0 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4P79_A cell adhesion protein; 99.9 6.8E-32 1.5E-36 194.6 0.0 198 1-198 1-198 (198)
2 3X29_C Claudin-19, Heat-labile 99.9 1.8E-27 3.8E-32 169.8 0.0 183 4-186 1-185 (185)
3 5B2G_A Endolysin,Claudin-4 (E. 99.8 1.2E-25 2.5E-30 176.5 0.0 195 2-197 168-364 (364)
4 5KK2_G Glutamate receptor 2, V 99.8 1.1E-24 2.4E-29 168.3 0.0 190 1-198 1-212 (323)
5 5GJV_E Voltage-dependent L-typ 99.8 1.2E-24 2.6E-29 159.3 0.0 188 2-198 1-214 (222)
6 6C14_D Protocadherin-15, LHFPL 99.8 5.7E-24 1.2E-28 156.8 0.0 181 5-198 28-218 (228)
7 6DLZ_D Glutamate receptor 2,Vo 99.5 1.8E-18 3.9E-23 150.8 0.0 189 2-198 820-1030(1031)
8 5YQ7_F Beta subunit of light-h 52.1 6.7 0.00014 20.5 0.0 32 6-37 9-42 (42)
No 1
>4P79_A cell adhesion protein; cell adhesion, tight junction, membrane; HET: OLC, MSE; 2.4A {Mus musculus}
Probab=99.94 E-value=6.8e-32 Score=194.63 Aligned_cols=198 Identities=100% Similarity=1.536 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcccccCCCccccceEEeccchhhhccCCCCeecccchhHhcCChhHH
Q 4P79:A|PDBID|C 1 GSEFMSVAVETFGFFMSALGLLMLGLTLSNSYWRVSTVHGNVITTNTIFENLWYSCATDSLGVSNCWDFPSMLALSGYVQ 80 (198)
Q Consensus 1 ~~~m~~~~l~~~~~~l~~~a~~l~~~a~~t~~W~~~~~~~~~~~~~~~~~GLw~~C~~~~~~~~~C~~~~~~~~~~~~~~ 80 (198)
|.+|+++.++.+++++.++++++.++++.+|+|.+.+.+++..++...+.|||+.|..+.+++..|.+..+.+..+++.+
T Consensus 1 ~~~m~~~~~~~~~~~l~~~a~~l~~va~~tp~W~~~~~~~~~~~~~~~~~GLw~~C~~~~~~~~~C~~~~~~~~~~~~~~ 80 (198)
T 4P79_A 1 GSEFMSVAVETFGFFMSALGLLMLGLTLSNSYWRVSTVHGNVITTNTIFENLWYSCATDSLGVSNCWDFPSMLALSGYVQ 80 (198)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCSEEEC--------CEEEECSSEEEEECTTSCEEEEECCHHHHHHSSHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccccceEEeccchhhhhcCCCCcccccchHHhcCCHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc
Q 4P79:A|PDBID|C 81 GCRALMITAILLGFLGLFLGMVGLRATNVGNMDLSKKAKLLAIAGTLHILAGACGMVAISWYAVNITTDFFNPLYAGTKY 160 (198)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (198)
.+|.++++++++.++++++.++..++..+..+++++++......+++.++++++.++++++|+..++.+++.+..++.+.
T Consensus 81 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 160 (198)
T 4P79_A 81 GCRALMITAILLGFLGLFLGMVGLRATNVGNMDLSKKAKLLAIAGTLHILAGACGMVAISWYAVNITTDFFNPLYAGTKY 160 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCc
Q ss_pred eecchHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcccC
Q 4P79:A|PDBID|C 161 ELGPALYLGWSASLLSILGGICVFSTAAASSKEEPATR 198 (198)
Q Consensus 161 ~~g~sf~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 198 (198)
++||||+++|++.++.++++++++...++.+++++++|
T Consensus 161 ~~g~s~~l~~~a~~l~~~~~i~~~~~~~~~~~~~~~~~ 198 (198)
T 4P79_A 161 ELGPALYLGWSASLLSILGGICVFSTAAASSKEEPATR 198 (198)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhchhccCCCCccCC
No 2
>3X29_C Claudin-19, Heat-labile enterotoxin B chain; TOXIN-CELL ADHESION COMPLEX, TIGHT JUNCTION; 3.7A {Mus musculus}; Related PDB entries: 3X29_A
Probab=99.88 E-value=1.8e-27 Score=169.81 Aligned_cols=183 Identities=38% Similarity=0.775 Sum_probs=0.0 Template_Neff=10.300
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcccccCCC-ccccceEEeccchhhhccCCCCeecccchhHhcCChhHHHH
Q 4P79:A|PDBID|C 4 FMSVAVETFGFFMSALGLLMLGLTLSNSYWRVSTVHGN-VITTNTIFENLWYSCATDSLGVSNCWDFPSMLALSGYVQGC 82 (198)
Q Consensus 4 m~~~~l~~~~~~l~~~a~~l~~~a~~t~~W~~~~~~~~-~~~~~~~~~GLw~~C~~~~~~~~~C~~~~~~~~~~~~~~~~ 82 (198)
|+++.+++++.+++++++++.++++.+|+|.+.+.+++ .......+.|||+.|...+.++.+|.++++.+..|++.+.+
T Consensus 1 M~~~~~~~~~~~l~~~~~~l~i~a~~tp~W~~~~~~~~~~~~~~~~~~GLw~~C~~~~~~~~~C~~~~~~~~~~~~~~~~ 80 (185)
T 3X29_C 1 MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKLYDSLLALDGHIQSA 80 (185)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCSCSEEEEECSSSSSSCEEEEECSSEEEC----CCCCEEECCC-----CHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhCchhhhcccCCCcccccceeeeeccchhhhcCCCcEEceechhHhcCCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC-CCCCce
Q 4P79:A|PDBID|C 83 RALMITAILLGFLGLFLGMVGLRATNVGNMDLSKKAKLLAIAGTLHILAGACGMVAISWYAVNITTDFFNPLY-AGTKYE 161 (198)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 161 (198)
|.++++++++.++++++.+++.++.++.+.++++++.....++++.++++++.++++++|+..++++..++.+ ...+.+
T Consensus 81 ~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (185)
T 3X29_C 81 RALMVVAVLLGFVAMVLSVVGMKATRVGDSNPTAKSRVAISGGALFLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYE 160 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccc
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHhh
Q 4P79:A|PDBID|C 162 LGPALYLGWSASLLSILGGICVFST 186 (198)
Q Consensus 162 ~g~sf~l~~~~~~l~~~~~~l~~~~ 186 (198)
+||||+++|++.++.++++++++++
T Consensus 161 ~g~s~~l~~~~~~l~~~~~~l~~~~ 185 (185)
T 3X29_C 161 FGPALFVGWASAGLAMLGGSFLAAT 185 (185)
T ss_dssp ECTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcC
No 3
>5B2G_A Endolysin,Claudin-4 (E.C.3.2.1.17), Heat-labile enterotoxin B; Membrane protein, Complex, Cell-free protein; HET: MSE; 3.5A {Enterobacteria phage T4}; Related PDB entries: 5B2G_E 5B2G_C 5B2G_G
Probab=99.84 E-value=1.2e-25 Score=176.50 Aligned_cols=195 Identities=37% Similarity=0.639 Sum_probs=0.0 Template_Neff=9.700
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcccccCCC-ccccceEEeccchhhhccCCCCeecccchhHhcCChhHH
Q 4P79:A|PDBID|C 2 SEFMSVAVETFGFFMSALGLLMLGLTLSNSYWRVSTVHGN-VITTNTIFENLWYSCATDSLGVSNCWDFPSMLALSGYVQ 80 (198)
Q Consensus 2 ~~m~~~~l~~~~~~l~~~a~~l~~~a~~t~~W~~~~~~~~-~~~~~~~~~GLw~~C~~~~~~~~~C~~~~~~~~~~~~~~ 80 (198)
.+|+++.++.++++++++++++.++++.+|+|.+.+..++ .......+.|||+.|.....+...|..+.+.+..+.+.+
T Consensus 168 ~~m~~~~~~~~~~~l~~~a~il~~va~~tp~W~~~~~~~~~~~~~~~~~~GLw~~C~~~~~~~~~C~~~~~~~~~~~~~~ 247 (364)
T 5B2G_A 168 KGMASMGLQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQMQCKVYDSLLALPQDLQ 247 (364)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHSSCSEEEEECSTTCSSCEEEEECSSEEEEEESSSSCEEEECCSSCSCCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhhcccCCcccCceeEEEeccchheeecCCceEeeechhhhcCCHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC-CCCC
Q 4P79:A|PDBID|C 81 GCRALMITAILLGFLGLFLGMVGLRATNVGNMDLSKKAKLLAIAGTLHILAGACGMVAISWYAVNITTDFFNPLY-AGTK 159 (198)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 159 (198)
++++++++++++.++++++.+++.++.++.+. .+.+.......++++++++++.++++++|...+..+++.+.. .+.+
T Consensus 248 ~~~~~~i~s~i~~~~a~i~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~l~~~~~v~~~~~~~~~~~~~~~~~~~~~ 326 (364)
T 5B2G_A 248 AARALVIISIIVAALGVLLSVVGGKCTNCLED-ESAKAKTMIVAGVVFLLAGLMVIVPVSWTAHNIIQDFYNPLVASGQK 326 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC--------C-CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCSSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC-hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCcccCCCCC
Q ss_pred ceecchHHHHHHHHHHHHHHHHHHHhhhhhcCCCCccc
Q 4P79:A|PDBID|C 160 YELGPALYLGWSASLLSILGGICVFSTAAASSKEEPAT 197 (198)
Q Consensus 160 ~~~g~sf~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 197 (198)
.++|||||++|++.++.+++++++++..+..++++..+
T Consensus 327 ~~~GwS~~l~~~s~~l~lia~~l~~~~~~~~~~~~~~~ 364 (364)
T 5B2G_A 327 REMGASLYVGWAASGLLLLGGGLLCCSGPSSGENLYFQ 364 (364)
T ss_dssp EEECTHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccC
No 4
>5KK2_G Glutamate receptor 2, Voltage-dependent calcium; Tetrameric, ionotropic, glutamate receptors, GluA2; 7.3A {Rattus norvegicus}; Related PDB entries: 5VOT_E 5VOT_H 5VOU_H 5KK2_H 5VOV_E 5VOT_F 5KK2_F 5VOT_G 5VOV_G 5VOU_E 5VOV_H 5VOU_G 5VOV_F 5VOU_F 5KK2_E
Probab=99.82 E-value=1.1e-24 Score=168.32 Aligned_cols=190 Identities=15% Similarity=0.164 Sum_probs=0.0 Template_Neff=8.600
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcccccCCC-----------ccccceEEeccchhhhccCCCCeecccc
Q 4P79:A|PDBID|C 1 GSEFMSVAVETFGFFMSALGLLMLGLTLSNSYWRVSTVHGN-----------VITTNTIFENLWYSCATDSLGVSNCWDF 69 (198)
Q Consensus 1 ~~~m~~~~l~~~~~~l~~~a~~l~~~a~~t~~W~~~~~~~~-----------~~~~~~~~~GLw~~C~~~~~~~~~C~~~ 69 (198)
|..|.++.+.+++++++++++++.++++.+|+|.+.+.... .......+.|||+.|...+.++..|..+
T Consensus 1 m~~~~r~~l~~l~~vl~~~a~vL~~ia~~tp~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~GLw~~C~~~~~~~~~C~~~ 80 (323)
T 5KK2_G 1 MGLFDRGVQMLLTTVGAFAAFSLMTIAVGTDYWLYSRGVCKTKSVSENETSKKNEEVMTHSGLWRTCCLEGNFKGLCKQI 80 (323)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCCCCBCCCC-----------------CCEECCSSEEEEC---CCCEEEECC
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeecccCCCCCcccccccccceeeeeccccchhccccccCCceeec
Q ss_pred hhHhcC-----------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 4P79:A|PDBID|C 70 PSMLAL-----------SGYVQGCRALMITAILLGFLGLFLGMVGLRATNVGNMDLSKKAKLLAIAGTLHILAGACGMVA 138 (198)
Q Consensus 70 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~ 138 (198)
++.... ...+++.+.+.++++++.++++++.++..+. +.+......+++++++++++.+++
T Consensus 81 ~~f~~~~~~~~~~~~~~~~~~r~~~~f~ilsl~l~~l~~l~~~~~~~~--------~~~~~~~~~agil~~lAgl~~~i~ 152 (323)
T 5KK2_G 81 DHFPEDADYEADTAEYFLRAVRASSIFPILSVILLFMGGLCIAASEFY--------KTRHNIILSAGIFFVSAGLSNIIG 152 (323)
T ss_dssp CC-CCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------ccchHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhcCCCcCCCCCceecchHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcccC
Q 4P79:A|PDBID|C 139 ISWYAVNITTDFFNPLYAGTKYELGPALYLGWSASLLSILGGICVFSTAAASSKEEPATR 198 (198)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~g~sf~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 198 (198)
+++|...+..+.........++++|||||++|++.++.++++++.+..+...++++++++
T Consensus 153 vily~~~~~~~~~~~~~~~~~~~~GwSf~~~~~s~~l~~la~vl~v~~~~~~~~~~~~~~ 212 (323)
T 5KK2_G 153 IIVYISANAGDPSKSDSKKNSYSYGWSFYFGALSFIIAEMVGVLAVHMFIDRHKQLRATA 212 (323)
T ss_dssp HHHHHHGGGC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_pred HHHHHHHhcCCcccCccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
No 5
>5GJV_E Voltage-dependent L-type calcium channel subunit; complex, channel, membrane protein; HET: PC1, BMA, NAG; 3.6A {Oryctolagus cuniculus}; Related PDB entries: 3JBR_E 5GJW_E
Probab=99.81 E-value=1.2e-24 Score=159.28 Aligned_cols=188 Identities=17% Similarity=0.231 Sum_probs=0.0 Template_Neff=10.600
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcccccCCCc--cccceEEeccchhhhccCCC-------------Ceec
Q 4P79:A|PDBID|C 2 SEFMSVAVETFGFFMSALGLLMLGLTLSNSYWRVSTVHGNV--ITTNTIFENLWYSCATDSLG-------------VSNC 66 (198)
Q Consensus 2 ~~m~~~~l~~~~~~l~~~a~~l~~~a~~t~~W~~~~~~~~~--~~~~~~~~GLw~~C~~~~~~-------------~~~C 66 (198)
++|+++.+..++++++++++++.++++.+|+|.+.+....+ ......+.|||+.|...... ..+|
T Consensus 1 m~~~~~~~~~~~~~l~~~~~~l~~ia~~t~~W~~~~~~~~~~~~~~~~~~~GLw~~C~~~~~~~~~~~c~~~~~~~~~~C 80 (222)
T 5GJV_E 1 MSPTEAPKVRVTLFCILVGIVLAMTAVVSDHWAVLSPHMENHNTTCEAAHFGLWRICTKRIALGEDRSCGPITLPGEKNC 80 (222)
T ss_dssp CHHHHSHHHHHHHHHHHHHHHHHHHHHHCCCSEEEECC-------CCEEECCSSCEEEEC---------------CCEEE
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHhCcchhhcCCCCCCCCcchheeecccHHHhchhhccCCCCCCccccCCCcccc
Q ss_pred ccchhHh-----------cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHH
Q 4P79:A|PDBID|C 67 WDFPSML-----------ALSGYVQGCRALMITAILLGFLGLFLGMVGLRATNVGNMDLSKKAKLLAIAGTLHILAGACG 135 (198)
Q Consensus 67 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~ 135 (198)
..+.+.. ..+.+.+..+.++++++++.++++++.++..+. .+......++++.++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~ls~~~~ 151 (222)
T 5GJV_E 81 SYFRHFNPGESSEIFEFTTQKEYSISAAAISVFSLGFLIMGTICALMAFRK---------KRDYLLRPASMFYVFAGLCL 151 (222)
T ss_dssp ECC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHTTT---------TCCTTHHHHHHHHHHHHHHH
T ss_pred eeeeccCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---------CChhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhcCCCcCCCCCceecchHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcccC
Q 4P79:A|PDBID|C 136 MVAISWYAVNITTDFFNPLYAGTKYELGPALYLGWSASLLSILGGICVFSTAAASSKEEPATR 198 (198)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sf~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 198 (198)
++++++|...++.+..+......+.++||||+++|++.++.++++++.++..++.++++++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~l~~~a~~l~~l~~~l~~~~~~~~~~~~~~~~ 214 (222)
T 5GJV_E 152 FVSLEVMRQSVKRMIDSEDTVWIEYYYSWSFACACAAFVLLFLGGISLLLFSLPRMPQNPWES 214 (222)
T ss_dssp HHHHHHHHHHHHHCC--------EEEECHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTSC
T ss_pred HHHHHHHHHHHHHhcCCCCCcceEeecchHHHHHHHHHHHHHHHHHHHHHHcccCCCCCcchh
No 6
>6C14_D Protocadherin-15, LHFPL tetraspan subfamily member; PCDH15, LHFPL5, protocadherin, tip link;{Mus musculus}; Related PDB entries: 6C14_B
Probab=99.79 E-value=5.7e-24 Score=156.78 Aligned_cols=181 Identities=14% Similarity=0.065 Sum_probs=0.0 Template_Neff=9.000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCCcccccCCCccccceEEeccchhhhccCC-CCeecccchhHhcC--ChhHHH
Q 4P79:A|PDBID|C 5 MSVAVETFGFFMSALGLLMLGLTLSNSYWRVSTVHGNVITTNTIFENLWYSCATDSL-GVSNCWDFPSMLAL--SGYVQG 81 (198)
Q Consensus 5 ~~~~l~~~~~~l~~~a~~l~~~a~~t~~W~~~~~~~~~~~~~~~~~GLw~~C~~~~~-~~~~C~~~~~~~~~--~~~~~~ 81 (198)
+.+.+.+++++++++++++.++|+.+|+|...+.++. ...+.|||+.|..... ...+|......... +.++++
T Consensus 28 ~~~~~~~~~~~l~~~a~~l~~va~~tp~W~~~~~~~~----~~~~~GLw~~C~~~~~~~~~~C~~~~~~~~~~~~~~~~a 103 (228)
T 6C14_D 28 NSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVSTP----QAGYFGLFSYCVGNVLSSELICKGGPLDFSSIPSRAFKT 103 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSCSEECCC-------CEECCCSSSCBEECTTCCCCCBCCSSCCSSSSSCHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHChHhhCCCCCCC----CCceeehhhhhccccCCcceeeecCCCCHhhCCCHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------Cc
Q 4P79:A|PDBID|C 82 CRALMITAILLGFLGLFLGMVGLRATNVGNMDLSKKAKLLAIAGTLHILAGACGMVAISWYAVNITTDFFN-------PL 154 (198)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~~~~~~~~~~~~~~-------~~ 154 (198)
+|.++++++++.++++++.++..++ ++.......++++++++++.++++++|+..++.+... ..
T Consensus 104 ~~~l~i~~~~l~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~lagl~~lv~~ivf~~~~~~~~~~~~~~~~~~~ 174 (228)
T 6C14_D 104 AMFFVALAMFLIIGSIICFSLFFVC---------NTATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGK 174 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTS---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc---------ccchHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHhcCCCCC
Q ss_pred CCCCCceecchHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcccC
Q 4P79:A|PDBID|C 155 YAGTKYELGPALYLGWSASLLSILGGICVFSTAAASSKEEPATR 198 (198)
Q Consensus 155 ~~~~~~~~g~sf~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 198 (198)
+.+.+.++||||+++|++.++.+++++++++..+++++++++++
T Consensus 175 ~~~~~~~~GwSf~la~~a~~l~~la~il~~~~~~~~~~~~~~~~ 218 (228)
T 6C14_D 175 YTLGHCTIRWAFMLAILSIGDALILSFLAFVLGYRQDKLLPDDY 218 (228)
T ss_dssp ---CCCEECHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhh
No 7
>6DLZ_D Glutamate receptor 2,Voltage-dependent calcium channel; Ion channel, TRANSPORT PROTEIN; HET: GLU, CYZ; 3.9A {Rattus norvegicus}; Related PDB entries: 5VHY_B 5WEL_C 5WEL_D 5VHZ_E 5WEK_D 5WEN_C 5VHX_E 5VHY_C 5VHZ_F 5VHY_D 5VHZ_B 5WEN_D 5WEM_C 5WEL_B 5WEM_A 5VHX_C 5WEM_D 5WEK_C 5WEK_A 5VHY_A 5VHW_C 5VHX_A 5VHZ_C 5VHW_D 5VHY_E 5WEN_A 5VHX_B 5VHX_D 5VHW_B 5WEL_A 5VHW_A 5VHZ_D 5WEN_B 5WEK_B 5VHY_F 5VHZ_A 5WEM_B 5WEO_B 5KBT_D 5KBS_A 5KBU_B 5WEO_C 5KBU_A 5KBS_C 5KBU_D 5KBT_A 5KBS_B 5KBT_C 5KBT_B 5KBU_C 5WEO_D 5WEO_A 5KBS_D 6DM2_D 6DLZ_A 6DM0_A 6DM0_B 6DM1_D 6DM2_C 6DM0_C 6DM1_B 6DLZ_B 6DM2_B 6DM1_C 6DM2_A 6DLZ_C 6DM1_A 6DM0_D
Probab=99.53 E-value=1.8e-18 Score=150.79 Aligned_cols=189 Identities=13% Similarity=0.177 Sum_probs=0.0 Template_Neff=11.600
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC-----------cccccCCCccccceEEeccchhhhccCCCCeecccch
Q 4P79:A|PDBID|C 2 SEFMSVAVETFGFFMSALGLLMLGLTLSNSYW-----------RVSTVHGNVITTNTIFENLWYSCATDSLGVSNCWDFP 70 (198)
Q Consensus 2 ~~m~~~~l~~~~~~l~~~a~~l~~~a~~t~~W-----------~~~~~~~~~~~~~~~~~GLw~~C~~~~~~~~~C~~~~ 70 (198)
+...+......+.+++.+++.+.+++..+|+| ...+..+........+.|||+.|.....+..+|..+.
T Consensus 820 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~GLw~~C~~~~~~~~~C~~~~ 899 (1031)
T 6DLZ_D 820 GLFDRGVQMLLTTVGAFAAFSLMTIAVGTDYWLYSRGVCKTKSVSEDETSKKNEEVMTHSGLWRTCCLEGNFKGLCKQID 899 (1031)
T ss_dssp -CCSTTTHHHHHHHHHHHHHHHHHHHHSCSCSEEEECCSCCC-------------CEEEECSSBCCBCSSSSCSCCCBCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhccCcceeeccccccccCCcCccccccccccccccceeeeeecCcccCceeecc
Q ss_pred hHh-----------cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 4P79:A|PDBID|C 71 SML-----------ALSGYVQGCRALMITAILLGFLGLFLGMVGLRATNVGNMDLSKKAKLLAIAGTLHILAGACGMVAI 139 (198)
Q Consensus 71 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~ 139 (198)
... ....+++++++++++++++.++++++.+++.+. +.+......+++++++++++.++++
T Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1031)
T 6DLZ_D 900 HFPEDADYEADTAEYFLRAVRASSIFPILSVILLFMGGLCIAASEFY--------KTRHNIILSAGIFFVSAGLSNIIGI 971 (1031)
T ss_dssp CCCCSSTTTTCHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTSSTT--------CSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccCCceehhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhcCCCcCCCCCceecchHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcccC
Q 4P79:A|PDBID|C 140 SWYAVNITTDFFNPLYAGTKYELGPALYLGWSASLLSILGGICVFSTAAASSKEEPATR 198 (198)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~g~sf~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 198 (198)
++|+...+.+.........++++||||+++|+|.++.+++++++++....+++++++++
T Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1031)
T 6DLZ_D 972 IVYISANAGDPSKSDSKKNSYSYGWSFYFGALSFIIAEMVGVLAVHMFIDRHKQLTGGA 1030 (1031)
T ss_dssp HHHHHHHCC-------CCSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhcCCcccCCCCcccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCC
No 8
>5YQ7_F Beta subunit of light-harvesting 1; Photosynthetic core complex, PHOTOSYNTHESIS; HET: MQE, BCL, HEM, KGD, BPH;{Roseiflexus castenholzii}; Related PDB entries: 5YQ7_V 5YQ7_3 5YQ7_T 5YQ7_J 5YQ7_9 5YQ7_N 5YQ7_A 5YQ7_P 5YQ7_H 5YQ7_D 5YQ7_5 5YQ7_7 5YQ7_1 5YQ7_R
Probab=52.07 E-value=6.7 Score=20.51 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=0.0 Template_Neff=3.200
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc--CCcccc
Q 4P79:A|PDBID|C 6 SVAVETFGFFMSALGLLMLGLTLSNS--YWRVST 37 (198)
Q Consensus 6 ~~~l~~~~~~l~~~a~~l~~~a~~t~--~W~~~~ 37 (198)
||.+...+.++..+|++...+-+.+| +|.+..
T Consensus 9 Rr~lval~~fl~vLallIHfiLLST~~~NWl~~~ 42 (42)
T 5YQ7_F 9 RTSVVVSTLLGLVMALLIHFVVLSSGAFNWLRAP 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCTTSSSCCSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccccccCC
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