1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
|
Query Only X amino acids
Match_columns 39
No_of_seqs 1 out of 1
Neff 1.0
Searched_HMMs 38388
Date Fri Feb 15 16:24:19 2019
Command hhsearch -i allx.fasta -d /pdb70_hhm_db
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1klr_A Zinc finger Y-chromosom 0.0 3.4E+04 0.88 -0.0 0.0 1 39-39 24-24 (30)
2 5ion_A Zinc finger and BTB dom 0.0 3.4E+04 0.89 0.0 0.0 1 4-4 10-10 (29)
3 2jvx_A NF-kappa-B essential mo 0.0 3.4E+04 0.89 0.0 0.0 1 4-4 1-1 (28)
4 2ab3_A ZNF29; zinc finger prot 0.0 3.4E+04 0.89 0.0 0.0 1 4-4 11-11 (29)
5 1sp2_A SP1F2; zinc finger, tra 0.0 3.5E+04 0.91 0.0 0.0 1 4-4 6-6 (31)
6 2lvr_A Zinc finger and BTB dom 0.0 3.5E+04 0.91 0.0 0.0 1 38-38 29-29 (30)
7 2kvf_A Zinc finger and BTB dom 0.0 3.5E+04 0.91 0.0 0.0 1 2-2 1-1 (28)
8 1dsq_A Nucleic acid binding pr 0.0 3.6E+04 0.94 0.0 0.0 1 36-36 17-17 (21)
9 5a7u_A ADR1, regulatory protei 0.0 3.6E+04 0.94 0.0 0.0 1 36-36 29-29 (29)
10 1zfd_A SWI5; DNA binding motif 0.0 3.6E+04 0.95 0.0 0.0 1 4-4 1-1 (32)
No 1
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=0.04 E-value=3.4e+04 Score=-0.01 Aligned_cols=1 Identities=0% Similarity=0.427 Sum_probs=0.0
Q Only 39 X 39 (39)
Q Consensus 39 ~ 39 (39)
.
T Consensus 24 ~ 24 (30)
T 1klr_A 24 T 24 (30)
T ss_dssp H
T ss_pred H
No 2
>5ion_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, MIZ-1, ZBTB17, transcription factor, trans; NMR {Homo sapiens}
Probab=0.04 E-value=3.4e+04 Score=0.00 Aligned_cols=1 Identities=0% Similarity=0.158 Sum_probs=0.0
Q Only 4 X 4 (39)
Q Consensus 4 ~ 4 (39)
.
T Consensus 10 ~ 10 (29)
T 5ion_A 10 G 10 (29)
T ss_dssp T
T ss_pred C
No 3
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=0.04 E-value=3.4e+04 Score=0.04 Aligned_cols=1 Identities=0% Similarity=0.575 Sum_probs=0.0
Q Only 4 X 4 (39)
Q Consensus 4 ~ 4 (39)
.
T Consensus 1 ~ 1 (28)
T 2jvx_A 1 S 1 (28)
T ss_dssp C
T ss_pred C
No 4
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=0.04 E-value=3.4e+04 Score=0.03 Aligned_cols=1 Identities=0% Similarity=0.158 Sum_probs=0.0
Q Only 4 X 4 (39)
Q Consensus 4 ~ 4 (39)
.
T Consensus 11 ~ 11 (29)
T 2ab3_A 11 G 11 (29)
T ss_dssp C
T ss_pred C
No 5
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=0.04 E-value=3.5e+04 Score=0.02 Aligned_cols=1 Identities=0% Similarity=0.427 Sum_probs=0.0
Q Only 4 X 4 (39)
Q Consensus 4 ~ 4 (39)
.
T Consensus 6 ~ 6 (31)
T 1sp2_A 6 T 6 (31)
T ss_dssp C
T ss_pred C
No 6
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=0.04 E-value=3.5e+04 Score=0.00 Aligned_cols=1 Identities=0% Similarity=0.251 Sum_probs=0.0
Q Only 38 X 38 (39)
Q Consensus 38 ~ 38 (39)
.
T Consensus 29 ~ 29 (30)
T 2lvr_A 29 E 29 (30)
T ss_dssp C
T ss_pred C
No 7
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=0.04 E-value=3.5e+04 Score=0.02 Aligned_cols=1 Identities=0% Similarity=0.155 Sum_probs=0.0
Q Only 2 X 2 (39)
Q Consensus 2 ~ 2 (39)
.
T Consensus 1 ~ 1 (28)
T 2kvf_A 1 M 1 (28)
T ss_dssp C
T ss_pred C
No 8
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=0.03 E-value=3.6e+04 Score=0.02 Aligned_cols=1 Identities=0% Similarity=0.170 Sum_probs=0.0
Q Only 36 X 36 (39)
Q Consensus 36 ~ 36 (39)
.
T Consensus 17 ~ 17 (21)
T 1dsq_A 17 D 17 (26)
T ss_dssp T
T ss_pred h
No 9
>5a7u_A ADR1, regulatory protein ADR1; protein folding, translation, ribosome, zinc finger, SECM, translational arrest peptide, cryo-EM; 4.80A {Saccharomyces cerevisiae} PDB: 1paa_A
Probab=0.03 E-value=3.6e+04 Score=0.03 Aligned_cols=1 Identities=0% Similarity=0.209 Sum_probs=0.0
Q Only 36 X 36 (39)
Q Consensus 36 ~ 36 (39)
.
T Consensus 29 ~ 29 (29)
T 5a7u_A 29 N 29 (29)
T ss_dssp -
T ss_pred C
No 10
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=0.03 E-value=3.6e+04 Score=0.03 Aligned_cols=1 Identities=0% Similarity=0.170 Sum_probs=0.0
Q Only 4 X 4 (39)
Q Consensus 4 ~ 4 (39)
.
T Consensus 1 ~ 1 (32)
T 1zfd_A 1 D 1 (32)
T ss_dssp C
T ss_pred C
Done!
|
