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# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord
# target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target
#------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
Globin PF00042.17 110 gi|4885477|ref|NP_005359.1| - 154 1e-22 80.5 0.3 1 1 1.1e-26 1.6e-22 79.8 0.3 1 109 7 112 7 113 0.97 Globin
Ig_3 PF13927.1 75 gi|126362951|ref|NP_001075106.1| - 106 9.3e-10 38.8 0.4 1 1 1.8e-13 1.4e-09 38.3 0.4 1 73 8 83 8 87 0.95 Immunoglobulin domain
Ig_2 PF13895.1 80 gi|126362951|ref|NP_001075106.1| - 106 1.6e-06 28.1 0.1 1 1 2.6e-10 2e-06 27.8 0.1 1 80 8 103 8 103 0.75 Immunoglobulin domain
Xpo1 PF08389.7 148 gi|22748937|ref|NP_065801.1| - 1204 8.5e-34 116.6 7.8 1 2 2.3e-37 1.2e-33 116.1 4.9 2 148 110 271 109 271 0.98 Exportin 1-like protein
Xpo1 PF08389.7 148 gi|22748937|ref|NP_065801.1| - 1204 8.5e-34 116.6 7.8 2 2 0.52 2.6e+03 -1.8 0.0 112 139 499 525 496 529 0.86 Exportin 1-like protein
IBN_N PF03810.14 77 gi|22748937|ref|NP_065801.1| - 1204 0.0044 16.9 0.0 1 2 7.3e-06 0.036 13.9 0.0 4 75 36 98 33 100 0.87 Importin-beta N-terminal domain
IBN_N PF03810.14 77 gi|22748937|ref|NP_065801.1| - 1204 0.0044 16.9 0.0 2 2 2 1e+04 -3.5 0.0 57 74 168 185 165 186 0.84 Importin-beta N-terminal domain
Rac1 PF09632.5 297 gi|22748937|ref|NP_065801.1| - 1204 0.095 11.7 0.3 1 2 0.00026 1.3 8.0 0.3 94 171 89 169 82 254 0.75 Rac1-binding domain
Rac1 PF09632.5 297 gi|22748937|ref|NP_065801.1| - 1204 0.095 11.7 0.3 2 2 0.041 2e+02 0.8 0.0 150 181 310 341 296 354 0.82 Rac1-binding domain
Pou PF00157.12 75 gi|125490392|ref|NP_038661.2| - 352 7.6e-37 124.8 0.5 1 1 5e-40 1.5e-36 123.9 0.5 3 75 133 205 131 205 0.97 Pou domain - N-terminal to homeobox domain
Homeobox PF00046.24 57 gi|125490392|ref|NP_038661.2| - 352 1.8e-18 65.8 1.1 1 1 1.2e-21 3.4e-18 64.9 1.1 1 57 224 280 224 280 0.98 Homeobox domain
HTH_31 PF13560.1 64 gi|125490392|ref|NP_038661.2| - 352 0.013 15.6 0.0 1 2 5.9e-05 0.18 12.0 0.0 1 35 141 181 141 185 0.95 Helix-turn-helix domain
HTH_31 PF13560.1 64 gi|125490392|ref|NP_038661.2| - 352 0.013 15.6 0.0 2 2 0.18 5.3e+02 0.9 0.0 39 62 245 268 243 270 0.85 Helix-turn-helix domain
Homeobox_KN PF05920.6 40 gi|125490392|ref|NP_038661.2| - 352 0.043 13.5 0.0 1 1 3.5e-05 0.1 12.2 0.0 7 39 244 276 241 277 0.91 Homeobox KN domain
DUF521 PF04412.8 400 gi|125490392|ref|NP_038661.2| - 352 0.15 10.5 0.1 1 1 9.4e-05 0.28 9.6 0.1 273 334 221 280 197 294 0.77 Protein of unknown function (DUF521)
#
# Program: hmmscan
# Version: 3.1b1 (May 2013)
# Pipeline mode: SCAN
# Query file: prot_multi.fa
# Target file: /home/bow/db/hmmer/protdb/Pfam-A.hmm
# Option settings: hmmscan -o hmmscan/text_31b1_hmmscan_001.out --tblout hmmscan/tab_31b1_hmmscan_001.out --domtblout hmmscan/domtab_31b1_hmmscan_001.out --pfamtblout hmmscan/pfamtab_31b1_hmmscan_001.out --cpu 2 /home/bow/db/hmmer/protdb/Pfam-A.hmm prot_multi.fa
# Current dir: /home/bow/devel/sandbox/biopy_cases
# Date: Sun May 11 21:26:57 2014
# [ok]
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